Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B08
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.099
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    30   0.53 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 470 PPP*PPAPGXXGGGXGXPPP 529
           PPP PP PG  G G   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +2

Query: 410 LXXXPXPGEXGFXFWAPXXXPPP*PPAPGXXGGGXGXPPPXGGXXVXP 553
           L   P P         P   P P PP     GG    PPP G     P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 21/72 (29%), Positives = 25/72 (34%)
 Frame = +2

Query: 521 PPPXGGXXVXPXIXGXPXKKPLXKRPPXGXXPXKGXVGGVFPXGXXPPXXPXKNPPXXXX 700
           PPP         + G    +P  +  P G  P  G  G V   G   P      PP    
Sbjct: 83  PPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPV-GLAGPVRGVGYTAP------PPPAGF 135

Query: 701 GXGKPPPGLXXI 736
           G G PPPG   +
Sbjct: 136 GRGAPPPGFRPV 147


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 458 PXXXPPP*PPAPGXXGGGXGXPPPXGG 538
           P   PPP PP PG        PPP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/83 (26%), Positives = 22/83 (26%)
 Frame = +2

Query: 470  PPP*PPAPGXXGGGXGXPPPXGGXXVXPXIXGXPXKKPLXKRPPXGXXPXKGXVGGVFPX 649
            P   PP P         P P G   V       P  KP    PP    P         P 
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV-PKPSVAVPPVPAPS 1118

Query: 650  GXXPPXXPXKNPPXXXXGXGKPP 718
            G  P   P    P      G PP
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +2

Query: 482  PPAPGXXGGGXGXPPPXGGXXVXPXIXGXPXKKPLXKRPPXGXXPXKGXVGGVFPXGXXP 661
            PP P    G    PPP     V     G P   P    PP    P  G      P    P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV-PTPSAGLPPVPVPTAKAP 1237

Query: 662  P 664
            P
Sbjct: 1238 P 1238



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
 Frame = +2

Query: 458  PXXXPPP*PPAPGXXGGGXGXPPPXGGXXVXP-XIXGXPXKKPLXKRPPXGXXPXKGXVG 634
            P   P   PP P         P P  G    P    G P   P  + PP    P  G V 
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV-PKPSVG-VP 1208

Query: 635  GVFPXGXXPP-XXPXKNPPXXXXGXGKPPP 721
             V P    PP   P    P       K PP
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/69 (26%), Positives = 20/69 (28%)
 Frame = +2

Query: 521 PPPXGGXXVXPXIXGXPXKKPLXKRPPXGXXPXKGXVGGVFPXGXXPPXXPXKNPPXXXX 700
           PPP       P I        L   PP    P +    G  P        P   PP    
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 701 GXGKPPPGL 727
             G+ PP L
Sbjct: 371 STGRQPPPL 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,026
Number of Sequences: 5004
Number of extensions: 18830
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)