Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B08
         (924 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.80 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    26   1.4  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   3.2  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 458 PXXXPPP*PPAPGXXGGGXGXPPP 529
           P   PPP P A G  GG  G  PP
Sbjct: 589 PPMGPPPSPLAGGPLGGPAGSRPP 612



 Score = 25.0 bits (52), Expect = 3.2
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +2

Query: 458 PXXXPPP*PPAPGXXGGGXGXPPPXGGXXVXPXIXGXPXKKPLXKRPP 601
           P   PPP PP P   G     PPP         + G P   P   RPP
Sbjct: 577 PNAQPPPAPPPPPPMG-----PPP-------SPLAGGPLGGPAGSRPP 612


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 538 PPXGGGXTXXPXRXPGGXGSGGG 470
           P  GGG +  P   PGG G GGG
Sbjct: 212 PGGGGGSSGGPG--PGGGGGGGG 232



 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 488 APGXXGGGXGXPPPXGG 538
           APG  GG  G P P GG
Sbjct: 211 APGGGGGSSGGPGPGGG 227



 Score = 23.4 bits (48), Expect = 9.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 491 PGXXGGGXGXPPPXGG 538
           PG  GGG G   P GG
Sbjct: 200 PGAGGGGSGGGAPGGG 215


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 19/72 (26%), Positives = 23/72 (31%)
 Frame = +2

Query: 524 PPXGGXXVXPXIXGXPXKKPLXKRPPXGXXPXKGXVGGVFPXGXXPPXXPXKNPPXXXXG 703
           PP     + P     P +  +    P G  P      G  P    PP    + PP     
Sbjct: 71  PPKPNISIPPPTMNMPPRPGMIPGMP-GAPPLLMGPNGPLP----PPMMGMRPPPMMVPT 125

Query: 704 XGKPPPGLXXIP 739
            G PP GL   P
Sbjct: 126 MGMPPMGLGMRP 137



 Score = 23.8 bits (49), Expect = 7.5
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
 Frame = +2

Query: 470 PPP*---PPAPGXXGGGXGXPPPXGG--XXVXPXIXG---XPXKKPLXKRPPXG 607
           PPP    PP PG   G  G PP   G    + P + G    P   P    PP G
Sbjct: 79  PPPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPMMVPTMGMPPMG 132


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,204
Number of Sequences: 2352
Number of extensions: 6973
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100468593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)