Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B07
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   2.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   4.7  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 315 SNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVAS 205
           SNSH+  P     EE + + DF ++     +S  V+S
Sbjct: 325 SNSHNSLPYSANEEEDVLQADFLVSQQSSMVSSYVSS 361


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +2

Query: 203 RDATVFDNQHSE-----VAIEKSTSKIDSSDVKIPGRI 301
           R  TV D  HS+     +  E  TSK+D+S  K PG++
Sbjct: 487 RTWTVIDPHHSQSFDNDILAEIPTSKLDNSSQKSPGKL 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,658
Number of Sequences: 5004
Number of extensions: 34336
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)