Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B07
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   1.2  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   4.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   8.6  

>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +2

Query: 296 RIWCE---FEEATETAICQEHCLPKGYSYGICVSNTCSC 403
           R+ C+   F+     + C  +CL  G + G C    C C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKGVCIC 81


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +2

Query: 296 RIWCE---FEEATETAICQEHCLPKGYSYGICVSNTCSC 403
           R+ C+   F+     + C  +CL  G + G C    C C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKVGCIC 81


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +2

Query: 296 RIWCE---FEEATETAICQEHCLPKGYSYGICVSNTCSC 403
           R+ C+   F+     + C  +C   G + G C    C C
Sbjct: 18  RVTCDLLSFKGQVNDSACAANCHSLGKAGGHCEKGVCIC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,963
Number of Sequences: 438
Number of extensions: 2817
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)