Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B06
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.0  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   5.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
 Frame = +1

Query: 658 P*APPP*RASQKSTXXSKVAXPDRXYKNXGXF----PP*KXPRXXPXXPT 795
           P  PPP     +ST  S++  P R   N G      PP   P   P  PT
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPT 287


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +1

Query: 769 PRXXPXXPTLPVYRNXFPAFXPXGKGGXFPXPHPXXXXXP 888
           P   P  P +PV    +P   P  +    P P P     P
Sbjct: 537 PTTIPLQPNIPVLNQQYPVMIPAMEDSRGPLPSPAHIMYP 576


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +3

Query: 756 PXKTPPXXPPFXXPARLPEXXSGFXPXGKGXXFPHXPPLXXXPXRXXVXPPQP 914
           P  TPP  PP   P+ LP       P G     P  PPL   P    + PP P
Sbjct: 416 PVPTPPSLPPSAPPS-LPPSAPPSLPMGA----PAAPPL---PPSAPIAPPLP 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,111
Number of Sequences: 5004
Number of extensions: 30460
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)