Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B06
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0016 + 110796-110979,111252-111768,111847-112213 34 0.14
12_02_0299 - 17051570-17052474,17053542-17053755 31 0.99
07_03_1751 - 29215074-29216270 31 1.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 2.3
12_02_1174 - 26696869-26698191 29 4.0
11_06_0610 - 25449085-25453284 29 4.0
12_02_0305 - 17235832-17236379,17237345-17237444 29 7.0
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 29 7.0
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 7.0
12_02_0304 + 17112677-17113195 28 9.2
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 28 9.2
06_01_0486 - 3455030-3455770 28 9.2
04_04_1125 + 31085106-31085714 28 9.2
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 28 9.2
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 34.3 bits (75), Expect = 0.14
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = +2
Query: 755 PXENXPAAPPXXXPCPFTGXXFRLSPLRERXALSPXPTPXXXPXPVLXPSPP 910
P + P P P P T SP A SP PTP P PV P+PP
Sbjct: 140 PLLSQPLRPMDFCPSPLTSP----SPPALALAPSPIPTPIIAPPPVSSPAPP 187
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 31.5 bits (68), Expect = 0.99
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +3
Query: 756 PXKTPPXXPPFXXPARLPEXXSGFXPXGKGXXFPHXPPLXXXPXRXXVXPP 908
P TPP PP P LP P FPH PP+ P PP
Sbjct: 248 PFLTPPSPPPPAFPFPLPPWPWAPPP---AFPFPHLPPIFSPPSPPPPPPP 295
>07_03_1751 - 29215074-29216270
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = -1
Query: 906 GXGXXTGXGXXXGVGXGEXAXLSRRGESRKXIPVNGQGXXXGGAAGXFSXG 754
G G G G GVG G + G + V G G GGA G G
Sbjct: 30 GLGGGGGFGGGGGVGHGGGVGIGFGGGKGGGVGVGGGGGFGGGAGGGLGHG 80
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 30.3 bits (65), Expect = 2.3
Identities = 25/96 (26%), Positives = 33/96 (34%)
Frame = +2
Query: 626 NRKKAPSLAFXHRLRPPDXHPKNXXXXQRWRXPTGTIKXPGXFPXENXPAAPPXXXPCPF 805
+R +P+ +L PD P PT T+ P P P P P
Sbjct: 38 HRSSSPTQTTLQQLHSPDSPPPPPL-------PTPTVTTPTPPPPPPAPRPPRRHHRIPP 90
Query: 806 TGXXFRLSPLRERXALSPXPTPXXXPXPVLXPSPPT 913
+P ++SP P P P P P PPT
Sbjct: 91 PPPPLLPTPPPPPASISPTPAPPLPPPPAPAP-PPT 125
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 770 PAAPPXXXPCPFTGXXFRLSPLRERXALSPXPTPXXXPXPVLXPSPP 910
PA P P P R+ P + P P P P P P PP
Sbjct: 117 PALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPP 163
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 686 PKNXXXXQRWRXPTGTIKXPGXFPXENXPAAPPXXXPCPFTGXXFRLSPLRERXALSPXP 865
PK+ ++ P K P P E P +PP P T P E+ P
Sbjct: 771 PKSSPPEEKSPPPHSPEKSP---PSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSG 827
Query: 866 TPXXXPXPVLXPSPPTXA 919
P PV SPP A
Sbjct: 828 HEGTPPSPVKSSSPPPEA 845
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 28.7 bits (61), Expect = 7.0
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 752 FPXENXPAAPPXXXPCPFTGXXFRLSPLRERXALSPXPTPXXXPXPVLXPS-PPTXA 919
F P PP P R SP +P P P PV+ PS PPT A
Sbjct: 64 FAQAKQPQTPPRRNPPRAPPSPRRASPPSVSVEPTPAPVIAPSPPPVVAPSQPPTIA 120
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 808 RNXFPA-FXPXGKGGXFPXPHPXXXXXPGXXSXPP 909
R FPA + P G G +P P+P P S PP
Sbjct: 327 RFAFPAGYYPPGPGYAYPPPYPPSYPPPYQPSYPP 361
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +3
Query: 768 PPXXPPFXXPARLPEXXSGFXPXGKGXXFPHXPPLXXXPXRXXVXPPQPG 917
PP P P R+P P G P PPL P R PP G
Sbjct: 283 PPPNAPMGMPPRIPPP-----PVGGTQPPPPPPPLANGPPRSIPPPPMTG 327
>12_02_0304 + 17112677-17113195
Length = 172
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 827 SPLRERXALSPXPTPXXXPXPVLXPSPP 910
+P R A SP T P PV+ PSPP
Sbjct: 38 APPSPRRAPSPSVTAEPTPAPVIAPSPP 65
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 539 PPXXGIRLSXKSGDTPGXNX*PKGQQKARN-RKKAPSLAFXH 661
PP I S SG T + PKGQ+++ N + AP+ A H
Sbjct: 136 PPPHSIFSSSSSGTTVVDDDTPKGQRRSANAEESAPAAAANH 177
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 756 PXKTPPXXPPFXXPARLPEXXSGFXPXGKGXXFPHXPPLXXXPXRXXVXPPQP 914
P TPP P P +P P P+ PP P V PP P
Sbjct: 77 PPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTP 129
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.3 bits (60), Expect = 9.2
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +2
Query: 722 PTGTIKXPGXFPXENXPAAPPXXXPCPFTGXXFRLSPLRERXALSPXPTPXXXPXPVLXP 901
PT T P P P PP P P T + +P + TP P P P
Sbjct: 49 PTPTPATPTTPPT---PWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAP 105
Query: 902 SPPT 913
S PT
Sbjct: 106 STPT 109
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 28.3 bits (60), Expect = 9.2
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Frame = -1
Query: 909 GGXGXXTGXGXXXGVGXGEXAXLSRRGESRKX--IPVNGQGXXXGGAAGXFSXGKXPG 742
GG G G G G G G RG I G G GG G FS G G
Sbjct: 282 GGKGGGGGGGGNTGGGIGGSTGGGGRGAGAGVGGITGGGDGGFPGGGGGGFSGGGGGG 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,403,954
Number of Sequences: 37544
Number of extensions: 342468
Number of successful extensions: 1007
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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