Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B06
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.6  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    29   6.3  
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = +1

Query: 754 PP*KXPRXXPXXPTLPVYRNXFPA--FXPXGKGGXFPXPHPXXXXXPGXXSXPP 909
           PP   P   P  P +P      P   F P G GG  P P P     PG    PP
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG-MPPPPPPGMRYPGGMPPPP 351


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = +1

Query: 754 PP*KXPRXXPXXPTLPVYRNXFPA--FXPXGKGGXFPXPHPXXXXXPGXXSXPP 909
           PP   P   P  P +P      P   F P G GG  P P P     PG    PP
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG-MPPPPPPGMRYPGGMPPPP 361


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +3

Query: 753 SPXKTPPXXPPFXXPARLPEXXSGFXPXGKGXXFPHXPPLXXXPXRXXVXPPQP 914
           +P  TP   PP   P+R+P       P       P  PPL        V PP P
Sbjct: 458 TPPTTPKPAPP--PPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPP 509


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
 Frame = +2

Query: 734 IKXPGXFPXENXPAAPPXXXPCPFTGXXFRLSPL-----RERXALSPXPTPXXXPXPVLX 898
           I  P  FP +  P   P   P P      +L P      + +  L P   P   P P+L 
Sbjct: 241 IPKPMPFP-KPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLKPKTKPKKNPVPILK 299

Query: 899 PSPP 910
           P PP
Sbjct: 300 PIPP 303


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +3

Query: 753 SPXKTPPXXPPFXXPARLPEXXSGFXPXGKGXXFPHXPPLXXXPXRXXVXPPQP 914
           +P  TP   PP   P+R+P       P       P  PPL        V PP P
Sbjct: 465 TPPTTPKPAPP--PPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPP 516


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 857 PXPTPXXXPXPVLXPSPP 910
           P PTP   P P+L P PP
Sbjct: 153 PPPTPIPTPVPILEPPPP 170


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
 Frame = +2

Query: 743 PGXFPXENXPAAPPXXXPCPF-TGXXFRLSPLRERXALSPXPTPXXXPXPVLXPSPPT 913
           P   P    PA P    P    T       P+    + SP P+P   P P L   P T
Sbjct: 494 PSSAPVHTPPAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLVQKPTT 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,630
Number of Sequences: 27780
Number of extensions: 225717
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)