Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B06
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 439 LGDXXMQXKPXTPPPXP 389
           LGD     KP  PPP P
Sbjct: 332 LGDSDTPPKPAPPPPPP 348


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +2

Query: 770 PAAPPXXXPCPFTGXXFRLSPLRERXALS-PXPTPXXXPXPVLXPS 904
           P  P    P P       LSP+RE+ + S P   P   P   L  S
Sbjct: 789 PMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPPQQNPYMFLPVS 834


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = +1

Query: 583 PRKXHXTKRPAKGQ--EPXKGPLXGVXP*APPP*RASQ 690
           P      + P +G    P +GP  G  P APP    SQ
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 820 PAFXPXGKGGXFPXPHPXXXXXP 888
           P   P G GG FP  +P     P
Sbjct: 381 PYGYPIGSGGSFPSLYPMATTSP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,493
Number of Sequences: 438
Number of extensions: 3926
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)