Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B05
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -1

Query: 913 GGXXGGVXXGXTPXXF*XPGXGXATXGXGGGFFXRXXRGGGXFG 782
           GG  GG   G     F   G G    G GGG +     GGG +G
Sbjct: 173 GGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYG 216


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 783 PKXPPPLXXLQKXP-PPXPXVAKPXPGX*KXXGVXPXXTPPXXPP 914
           P+  PP+   Q+ P PP P  A P P       + P   PP  PP
Sbjct: 209 PQGAPPMVQQQQMPMPPKPTFAHPGP------SMGPPMGPPMGPP 247


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = -1

Query: 913 GGXXGGVXXGXTPXXF*XPGXGXATXGXGGGFFXRXXRGGGXFGXNASXRXFLR 752
           GG  GG   G +       G G    G GGG +    RGGG  G N S    LR
Sbjct: 26  GGGRGGGGGGYSGGRGGGYGGGGG-GGYGGGGYGGGGRGGGRGGSNGSAGGRLR 78


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +3

Query: 783  PKXPPPLXXLQKXPPPXPXVAKPXPGX*KXXGVXPXXTPPXXP 911
            P  PPP   L   PPP P    P P   K     P   PP  P
Sbjct: 1343 PPPPPPSDDLTPVPPPPP----PPPTMSKAPTGVPLPVPPPPP 1381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,581
Number of Sequences: 27780
Number of extensions: 150979
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)