Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B04
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    27   3.6  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   8.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   8.4  

>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
 Frame = +2

Query: 434 PQNQGITQERTCEQKA--SKRPGTVKRPRCWRFSIGS-------APLTSITKIDAQVRGG 586
           PQ+   T ER  E     S +P  +KR      S+ S       +P +++ +I + +   
Sbjct: 124 PQSDNTTTERIIENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRIPSDLYDI 183

Query: 587 ETRQDYKDTRRFPLESSLVRSPVPTLPLTGYLSAFLPF 700
           +   +  D R F  +  L RS       TGY +  +PF
Sbjct: 184 KQFLENLDARSFKSDMDLKRSQNMRRRATGYPAIVVPF 221


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -3

Query: 850 PGXTQDDSYRIRRSGRAERGVRAHSPAWSE--RPTPELRYLQREL*ESATLPEXEKGGQV 677
           PG T+D  +RI R+GRA     A++   S+  +   EL  +  E  +       E     
Sbjct: 447 PGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYS 506

Query: 676 SGKRQGRNRRAHEG 635
           SG R G  RR   G
Sbjct: 507 SGGRGGNYRRGGYG 520


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 762 NDLHPN*DTYSVSYEKAPRFPXGRKADRYPVSGRVGTGERT 640
           N  HP   T + S  +  R   GR+ DR+  +GRV T + T
Sbjct: 97  NAAHPVDATGAPSNRRNARARRGREFDRHSQTGRVDTKKAT 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,878
Number of Sequences: 5004
Number of extensions: 65586
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)