Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B04
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.54
01_01_1008 - 7987936-7988628,7988923-7989102 31 0.94
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.6
01_03_0237 + 14068713-14069315,14069654-14069914 29 5.0
12_02_1188 + 26801833-26802225 29 6.6
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
02_04_0270 - 21439788-21441680 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 28 8.8
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.54
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 535 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIPVR-LSPXRE 705
L PP Q+WR+ PTG + +FP G LP A PA R P L P R
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72
Query: 706 A 708
A
Sbjct: 73 A 73
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 688 GGQVSGKRQGRNRRAHEGAFQGETPG 611
GG+V+G+ R+RR GA++GE G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -3
Query: 649 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 470
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 469 TCSFLRYPLILWITVLPPLSELIPLAAA 386
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>01_03_0237 + 14068713-14069315,14069654-14069914
Length = 287
Score = 29.1 bits (62), Expect = 5.0
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Frame = -3
Query: 829 SYRIRRSG-----RAERGVRAHSPAWSERPTPELRYLQREL*ESATLPEXEKGGQVS--- 674
++R+R SG R R A S +R +R+ EL + + ++
Sbjct: 3 AWRLRHSGISGVLRQRRAAAATSSGVGKRRRRRIRWRSTELRDDVEMTHRQRAVDAGVEE 62
Query: 673 --GKRQGRNRRAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFY 500
GKR+GR R + G +Q G V + T+ L GGG +GK R
Sbjct: 63 ERGKRRGRKRGSASGLYQRLRCGRKTVTT---TARLLAAARSNGGGGGGFGK----RGKK 115
Query: 499 GSWP 488
G WP
Sbjct: 116 GRWP 119
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 688 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 590
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 151 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 50
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 347 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 502
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>02_04_0270 - 21439788-21441680
Length = 630
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 841 TQDDSYRIRRSGRAERGVRAHSPAWSERPTPELRYLQR 728
++DDSYR+ R+G RG +S RPT EL +R
Sbjct: 591 SEDDSYRMSRNGGQRRG-----DGYSLRPTSELHNSRR 623
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 835 DDSYRIRRSGRAERGVRAHSPAWSER-PTPELRYLQ 731
D++ R+RR R + G AH+P W R P RY++
Sbjct: 57 DEAQRLRRERRGQ-GSGAHTPRWVRRTPDQMARYVE 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,124,866
Number of Sequences: 37544
Number of extensions: 531680
Number of successful extensions: 1494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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