Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B03
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    29   0.67 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    27   4.7  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   6.3  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 572 ISSGINFDKXDHIAVKVSG 628
           +S+GINF+K D I V+VSG
Sbjct: 144 VSTGINFEKYDDIPVEVSG 162



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 640 ETYRKFETANLRKYVLDNVLKAGYRKPHLFRKMQSXXIMSGR 765
           E   +F +  L  ++L N+  +GY +P   +K     + SGR
Sbjct: 166 EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 464 NDYEDNEIGENGETKKPVTYVPPEPTNDETEI---FSSTISSGINFDKXDHIAVKVSGE 631
           N  ++ EI ++ E+    T V  EPT +ETE      +++  G   DK    A   SG+
Sbjct: 140 NTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSDKTTSEASSASGD 198


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 655 FETANLRKYVLDNVLKAGYRKPHLFRKMQSXXIMSGRKFDG 777
           FE A    YVL  V + G+  P   ++      MSGR   G
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVG 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,401
Number of Sequences: 5004
Number of extensions: 39771
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)