Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B03
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973...    36   0.033
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009...    35   0.100
08_01_0099 + 709377-709493,710055-710099,710482-710553,712413-71...    31   1.6  
02_05_1014 + 33510108-33510471,33510857-33511362                       30   2.8  

>11_06_0300 +
           22095396-22096145,22096261-22096344,22097062-22097304,
           22098535-22098702,22098895-22099008,22099378-22099890
          Length = 623

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 545 DETEIFSSTISSGINFDKXDHIAVKVSGENPPRPI 649
           DE E+F +  ++GINFD  + I V+ SG   P P+
Sbjct: 120 DEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPV 154


>03_06_0365 -
           33399422-33399925,33400470-33400583,33400762-33400929,
           33401305-33401547,33402148-33402231,33402323-33403098,
           33404423-33404636
          Length = 700

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 488 GENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVSGENPPRPIES 655
           G +   ++P  +   E   + TE+   T ++GINFD  + I V+ SG + P P+ +
Sbjct: 184 GWDRRDREPNPFANSE-AEEATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNT 238


>08_01_0099 +
           709377-709493,710055-710099,710482-710553,712413-712484,
           712763-712839,713040-713169,713250-713360,713443-713568
          Length = 249

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 512 PVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVS 625
           P  YVP E  N+  E+F +   S I  +  DH+  K++
Sbjct: 144 PPAYVPEEQLNELEEVFRNARKSDIPTEVPDHLCCKIT 181


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 464 NDYEDNEIGENGETKKPVTYVPPEPTNDE 550
           N+   N  G+NG   +P  YVPP+P   E
Sbjct: 172 NNIPPNSGGDNGGGSRPGKYVPPKPRESE 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,836
Number of Sequences: 37544
Number of extensions: 230488
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)