Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B03
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 39 0.006
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 39 0.006
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 38 0.010
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 37 0.017
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 31 1.1
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 31 1.5
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 31 1.5
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 31 1.5
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 28 7.8
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 464 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVSGENPPR 643
N++ D+ G N + + E+ +F T SGINFDK ++I V+VSG++ P
Sbjct: 78 NNFADSGNGFNNNGAESNQWGGAPAEYSESNLFHRT-DSGINFDKYENIPVEVSGDSVPA 136
Query: 644 PIE 652
IE
Sbjct: 137 AIE 139
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 464 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVSGENPPR 643
N++ D+ G N + + E+ +F T SGINFDK ++I V+VSG++ P
Sbjct: 59 NNFADSGNGFNNNGAESNQWGGAPAEYSESNLFHRT-DSGINFDKYENIPVEVSGDSVPA 117
Query: 644 PIE 652
IE
Sbjct: 118 AIE 120
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 548 ETEIFSSTISSGINFDKXDHIAVKVSGENPPRPI 649
E E+FS +S GINFDK + I V+ +G++ P+PI
Sbjct: 133 EQELFSGQLS-GINFDKYEEIPVEATGDDVPQPI 165
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 655 FETANLRKYVLDNVLKAGYRKPHLFRKMQSXXIMSGRKFDGXXXXXXXXXXXXFXVPIIN 834
F +L +++ +N+ AGY +P +K + GR F VP++N
Sbjct: 168 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAA-FLVPLVN 226
Query: 835 MLLQDPKDLI 864
+LQD D +
Sbjct: 227 AILQDGPDAV 236
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 37.1 bits (82), Expect = 0.017
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 548 ETEIFSSTISSGINFDKXDHIAVKVSGENPPRPIE 652
E+ +F T SGINFDK ++I V+VSG++ P IE
Sbjct: 90 ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIE 123
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 467 DYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVSGENPPRP 646
++ED E+ E + ++ T+DE E F I S I+ ++ I P+
Sbjct: 43 EFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGDPQQ 102
Query: 647 IESSKLQ 667
+ES LQ
Sbjct: 103 LESPALQ 109
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 467 DYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVSGENPPRP 646
++ED E+ E + ++ T+DE E F I S I+ ++ I P+
Sbjct: 43 EFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGDPQQ 102
Query: 647 IESSKLQ 667
+ES LQ
Sbjct: 103 LESPALQ 109
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 488 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKXDHIAVKVSGENPPRPIESSK 661
G GE K TYVP E +E +F+ IS G+ F+K VK++ + P +++ K
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCK 552
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 488 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKXDHIAVKVSGENPPRPIESSK 661
G GE K TYVP E +E +F+ IS G+ F+K VK++ + P +++ K
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCK 552
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 488 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKXDHIAVKVSGENPPRPIESSK 661
G GE K TYVP E +E +F+ IS G+ F+K VK++ + P +++ K
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCK 552
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -1
Query: 833 LIMGTXKSSRLTRTSLGTXPSNFLPLIMXXDCIFLNRCGFL*PALSTLSKTYFLRFAVSN 654
+I+G S + L T S +LP + +C NR F+ L + + + AV+
Sbjct: 178 IILGVCFPSACSVADLTTVSSIYLPYNLKVECESQNRWSFVTVLLLIILMVWIVPQAVAT 237
Query: 653 FR*VSEDS 630
F+ S DS
Sbjct: 238 FQTSSNDS 245
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -1
Query: 833 LIMGTXKSSRLTRTSLGTXPSNFLPLIMXXDCIFLNRCGFL*PALSTLSKTYFLRFAVSN 654
+I+G S + L T S +LP + +C NR F+ L + + + AV+
Sbjct: 178 IILGVCFPSACSVADLTTVSSIYLPYNLKVECESQNRWSFVTVLLLIILMVWIVPQAVAT 237
Query: 653 FR*VSEDS 630
F+ S DS
Sbjct: 238 FQTSSNDS 245
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -1
Query: 833 LIMGTXKSSRLTRTSLGTXPSNFLPLIMXXDCIFLNRCGFL*PALSTLSKTYFLRFAVSN 654
+I+G S + L T S +LP + +C NR F+ L + + + AV+
Sbjct: 178 IILGVCFPSACSVADLTTVSSIYLPYNLKVECESQNRWSFVTVLLLIILMVWIVPQAVAT 237
Query: 653 FR*VSEDS 630
F+ S DS
Sbjct: 238 FQTSSNDS 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,463
Number of Sequences: 27780
Number of extensions: 218582
Number of successful extensions: 583
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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