Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B03
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       64   1e-12
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 64.5 bits (150), Expect = 1e-12
 Identities = 31/61 (50%), Positives = 41/61 (67%)
 Frame = +2

Query: 473 EDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKXDHIAVKVSGENPPRPIE 652
           EDN+  E  + K+   Y+PPE  NDE  +F + +  GINFDK D+I V VSG+N P+PIE
Sbjct: 139 EDNDEEEAQKPKEQ--YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIE 196

Query: 653 S 655
           S
Sbjct: 197 S 197



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 30/78 (38%), Positives = 38/78 (48%)
 Frame = +1

Query: 655 FETANLRKYVLDNVLKAGYRKPHLFRKMQSXXIMSGRKFDGXXXXXXXXXXXXFXVPIIN 834
           FE A LR  VLDN+ K+GY+KP   +K     IM+GR                F VPIIN
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMA-CAQTGSGKTAAFAVPIIN 256

Query: 835 MLLQDPKDLIXXNGXAXP 888
            LL+   DL+  +    P
Sbjct: 257 TLLERSVDLVVTSTYCEP 274


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 485 IGENGETKKPVTYVPPEP 538
           +G+N E K  VT  PP P
Sbjct: 324 VGDNVEIKCDVTGTPPPP 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,489
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)