Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   4.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.0  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +1

Query: 604 QDYKDTRRFPLESSLXALSCSRPCRLPDTCPPFSPSGSVALSHSSRCRYLSSV 762
           ++YK  RR PL+S          CR        S      ++  S+C+Y  S+
Sbjct: 18  EEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSGSEPCQACIATPSQCKYADSL 70


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 682 PDTCPPFSPSGSVALSHSSRCRYLSS 759
           P + P FSPS SV+   +S   Y+SS
Sbjct: 163 PSSTPVFSPSASVSSKVASSVSYVSS 188


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 23/56 (41%), Positives = 26/56 (46%)
 Frame = +2

Query: 620 PGVSPWKAPSXRSPVPDPAAYRIPVRLSPLREAWRFLIAHAVGISVRCRSFAPPAG 787
           P  SP  APS  S VP P   ++P    PL +A           S R  SFAPPAG
Sbjct: 180 PVKSPPSAPSLPSAVP-PMPPKVPP--PPLSQA------PVANTSSRPSSFAPPAG 226


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 563 SQKSTLKSEVAKPDRTIKIPGVSPWKAPSXRSPVPDPAAYRIPVRLSPLREAWRFLIA-H 739
           S K +L S +  P   +K+P     K+P  + P  + ++   P+R +P   +  F+I  H
Sbjct: 195 SPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLR-TPTSSSKTFVIVDH 253

Query: 740 AV----GISVRCRSFAP 778
           +      I  +  +FAP
Sbjct: 254 STPSPPSIRTKLEAFAP 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,024
Number of Sequences: 5004
Number of extensions: 61200
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)