Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A24
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.8  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   9.0  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   9.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 788 PPXXPXNPXKGPPLXGGFSXXXPPPPP 868
           PP  P  P K PP         PP PP
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 788 PPXXPXNPXKG-PPLXGGFSXXXPPPPP 868
           PP  P    +G PP+  G S    PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 779 PXGPPXXPXNPXKGPPLXGGFSXXXPPPP 865
           P  PP  P  P   PPL  G     P PP
Sbjct: 444 PAAPPLPPSAPI-APPLPAGMPAAPPLPP 471


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 800 PXNPXKGPPLXGGFSXXXPPPPP 868
           P NP   PP  G      PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 779  PXGPPXXPXNPXKGPPLXGGFSXXXPPPPP 868
            P  PP     P   PP+  G     PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 189 RNDRRAYEFQQRQ----ALRDDWNQVRDFEQREQKPRGPTQRSXNWR 317
           R+ RR  + Q+R       RD + + R+   RE+ PR P +   NW+
Sbjct: 44  RSSRRYEDSQRRDYSPARRRDRYERHRE-SVREESPRRPVEHERNWQ 89


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 791 PXXPXNPXKGPPLXGGFSXXXPPPPP 868
           P  P  P    P+  G +   PPPPP
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPPPPP 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,858
Number of Sequences: 5004
Number of extensions: 45940
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)