Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A21
         (970 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    38   0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.56 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 25/94 (26%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
 Frame = -2

Query: 639 PPXXPXPXXTGXXXRGXPPNXAXMTXPPPPXRXXXXXXXXXPPAXPRGGXGAXXRXGPPX 460
           PP  P P          PP       PPPP R         PP              P  
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395

Query: 459 PXXPXPGGRPXXQTGXXRPPPAPXPP-XQXSXPP 361
           P    P   P         PP P PP    S PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 33.5 bits (73), Expect = 0.046
 Identities = 22/93 (23%), Positives = 27/93 (29%)
 Frame = -2

Query: 639 PPXXPXPXXTGXXXRGXPPNXAXMTXPPPPXRXXXXXXXXXPPAXPRGGXGAXXRXGPPX 460
           PP  P     G    G   + + +  PPPP R         PP           R  P  
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 459 PXXPXPGGRPXXQTGXXRPPPAPXPPXQXSXPP 361
              P P       +    PPPA       + PP
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 27/100 (27%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
 Frame = -2

Query: 636 PXXPXPXXTGXXXRGXPP-NXAXMTXPPP-------PXRXXXXXXXXXPPAXPRGGXGAX 481
           P  P P   G      PP   A  T  PP       P           PP+ P G   A 
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447

Query: 480 XRXGPPXPXXPXPGGRPXXQTGXXRPPPAPXPPXQXSXPP 361
                     P P G P        PP AP PP   +  P
Sbjct: 448 PLPPSAPIAPPLPAGMP---AAPPLPPAAPAPPPAPAPAP 484



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 27/124 (21%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
 Frame = -2

Query: 639 PPXXPXPXXTGXXXRGXPPNXAXMTXPPPPXRXXXXXXXXXPPAXPRGGXGAXXRXGPPX 460
           PP  P    T       PP         P            P +       A  +  PP 
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 459 PXXPXPG--GRPXXQTGXXRPP-PAPXPPXQXSXPPXRXXXXDXRRXXXXXPPEAAGNTP 289
           P  P     G+P    G      P P PP + +           R      PP +A +T 
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373

Query: 288 RXXP 277
           R  P
Sbjct: 374 RQPP 377



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 27/134 (20%), Positives = 29/134 (21%), Gaps = 2/134 (1%)
 Frame = -2

Query: 654 PXXXXPPXXPXPXXTGXXXRGXPPNXAXMTXPPPPXRXXXXXXXXXPPAXPRGGXGAXXR 475
           P     P  P P       R  PP  +      PP           P   P G       
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414

Query: 474 XGPPXPXXPXPGGRP--XXQTGXXRPPPAPXPPXQXSXPPXRXXXXDXRRXXXXXPPEAA 301
              P P    P   P          P  AP  P      P               PP A 
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 300 GNTPRXXPXFXGPI 259
              P   P    P+
Sbjct: 475 APPPAPAPAPAAPV 488


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -3

Query: 590 PPXXXXE*PXPPPLXXGXXXXXXPPPPPXPXAVXA 486
           PP      P PPP   G      PPPPP P AV A
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = -1

Query: 565 PPPPPXXXGXXXXXXXPPRXXPXRXXRXXTXGAPXTXPPXPGGAAXXANXXXPPPP 398
           PPPPP           P    P         G P   PP PG A        PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM----GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 21/60 (35%), Positives = 21/60 (35%)
 Frame = -2

Query: 561 PPPPXRXXXXXXXXXPPAXPRGGXGAXXRXGPPXPXXPXPGGRPXXQTGXXRPPPAPXPP 382
           PPPP           P   P     A    GPP P  P PG       G   PPP P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP---PPAPIMGGPPPPPPP-PG-----VAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 923 PPXGXPGGGXPPPP 964
           PP G  G G PPPP
Sbjct: 766 PPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = -3

Query: 566 PXPPPLXXGXXXXXXPPPPPXPXAVXAXEXXXGPXNP 456
           P P P+         PPPPP P  V        P  P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 566 PXPPPLXXGXXXXXXPPPPPXPXAV 492
           P PPP   G      PPPPP P  V
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYV 33



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 471 GPPXPXXPXPGGRPXXQTGXXRPPPAPXP 385
           G P P  P PG  P  Q     PPP P P
Sbjct: 7   GNPPPPPPPPGFEPPSQ-----PPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 32/138 (23%), Positives = 35/138 (25%), Gaps = 11/138 (7%)
 Frame = -2

Query: 639  PPXXPXPXX---TGXXXRGXPPNXAXMTXPPPPXRXXXXXXXXXP-----PAXPRGGXGA 484
            PP  P P     +     G PP  A    PP P           P     P     G   
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122

Query: 483  XXRXGPPXPXXPXPGGRPXXQTGXXRPPPAPXPPXQXSXPPXRXXXXDXRRXXXXXPP-- 310
              +     P  P P G P         PP P P      P                PP  
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182

Query: 309  -EAAGNTPRXXPXFXGPI 259
              AAG  P   P    P+
Sbjct: 1183 KPAAGVPPVPPPSEAPPV 1200


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 468  PPXPXXPXPGGRPXXQTGXXRPPPAPXPPXQXSXPP 361
            PP    P P   P    G   PP AP PP   S  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAG---PPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/58 (25%), Positives = 15/58 (25%)
 Frame = -3

Query: 674  GXXGPXXPXXXPPXXXPGRXXRVXXXGGPPXXXXE*PXPPPLXXGXXXXXXPPPPPXP 501
            G   P  P   PP               PP      P PP            PPPP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 4.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 405 PPPAPXPPXQXSXPP 361
           P PAP PP   + PP
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 22.2 bits (45), Expect(2) = 4.8
 Identities = 10/30 (33%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
 Frame = -2

Query: 468 PPXPXXPXPGGRPXXQT-GXXRPPPAPXPP 382
           PP    P     P         PPP P PP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
 Frame = +3

Query: 402 GGGXXXFAXXAA--PPGXGGX--VXGAPXVLXRXNRXGXXRGGXXXXXXXPXXKGGGGGS 569
           GGG   F   +   PPG GG     G           G   GG       P   GGG G 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 570 FXRXXGG 590
           F    GG
Sbjct: 247 FGGGLGG 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.153    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,640
Number of Sequences: 5004
Number of extensions: 31305
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)