Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_A14
(979 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.027
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 31 0.33
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.57
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.0
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 9.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.027
Identities = 30/87 (34%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Frame = -2
Query: 969 GXGPXXPPXGXXXXXGGXXXXXXGXXPGG-GXRXXGPPRXXRGXAPXGGXPRXGGXPGGX 793
G G PP G G G GG G GP G GG P GG GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP--GGFGGGL 251
Query: 792 XXPXXGGAPPGXXPPXXGGGPXXXGXP 712
GG P G GGGP G P
Sbjct: 252 GG--FGGGPGGF-----GGGPGGHGGP 271
Score = 26.2 bits (55), Expect = 7.0
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = -2
Query: 813 GGXPGGXXXPXXGGAPPGXXPPXXGGGPXXXGXPPRGGGRXXXXXXXXXGGXXPAGXPXX 634
GG GG P G G G G G GGG G P G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 633 PAGRXPXXXPXGXXPGRXGXP 571
G G PG G P
Sbjct: 251 LGGFGGGPGGFGGGPGGHGGP 271
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.11
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Frame = +2
Query: 701 PPRGGXPXXXGPPPXXGGXXP--GGAPPXXGXXXPPGXP--PXRGXPPXGAXPRXXRGGP 868
PP P PPP P APP PP P P + P + P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 869 XXRXPPP 889
PPP
Sbjct: 199 PKVPPPP 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.19
Identities = 29/110 (26%), Positives = 30/110 (27%), Gaps = 6/110 (5%)
Frame = +2
Query: 662 PPXXXXXXXXXRPPPRGGXPXXX--GPPPXXGGXXPGGAP-PXXGXXXPPGXPPXRGXPP 832
PP +PP G PPP G P P G PP PP R P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP-PPPPRSAPS 371
Query: 833 XGAXP---RXXRGGPXXRXPPPGXXPXXXXXXPPXXXXXPXGGXXGPXPP 973
G P R PPP PP P PP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Score = 30.3 bits (65), Expect = 0.43
Identities = 32/140 (22%), Positives = 32/140 (22%), Gaps = 3/140 (2%)
Frame = -2
Query: 864 PPRXXRGXAPXGGXPRXGGXPGGXXXPXXGGAPPGXXPPXXGGGPXXXGXPPRGG---GR 694
P R RG P G P P A PP P PPR GR
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP--PPPRSAPSTGR 374
Query: 693 XXXXXXXXXGGXXPAGXPXXPAGRXPXXXPXGXXPGRXGXPAXPXPGXGXXGGXXRXPPX 514
P P GR P R P P P PP
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 513 PXRPRXGXXXGXPQXPXPAP 454
P P AP
Sbjct: 435 APPSLPMGAPAAPPLPPSAP 454
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = -3
Query: 653 RXXXXPPPPAXXPGXXPXGXXPXXXGXRPPPXPGXGXXGGXXAXPP 516
R PPP G P G PPP P G PP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = -2
Query: 654 PAGXPXXPAGRXPXXXPXGXXPGRXGXPAXPXPGXGXXGGXXRXPPXPXRP 502
P P P+ R P P P P P P G PP P P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPA---PPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 26.6 bits (56), Expect = 5.3
Identities = 40/177 (22%), Positives = 42/177 (23%), Gaps = 1/177 (0%)
Frame = +2
Query: 446 PPXGAGXGXWGXPXXSPXRGRXGXGGXRXXPPXXPXPGXGXAGXPXRPGXXPXGXXXGXR 625
PP G G P P G P P G + P P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSI-------PLPPQGRSAPPPPPPRSAPSTGRQPP 377
Query: 626 PAGXXGXPAGXX-PPXXXXXXXXXRPPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPP 802
P + PP PP G PP P APP PP
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Query: 803 GXPPXRGXPPXGAXPRXXRGGPXXRXPPPGXXPXXXXXXPPXXXXXPXGGXXGPXPP 973
P G P A P P P P P PP P P P
Sbjct: 438 SLP--MGAP---AAPPLPPSAP-IAPPLPAGMP-AAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.7 bits (66), Expect = 0.33
Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 4/107 (3%)
Frame = +2
Query: 662 PPXXXXXXXXXRPPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPPGX----PPXRGXP 829
PP PPP P PPP PG P PG PP P
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268
Query: 830 PXGAXPRXXRGGPXXRXPPPGXXPXXXXXXPPXXXXXPXGGXXGPXP 970
P P PPP PP G P P
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 30.7 bits (66), Expect = 0.33
Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 4/107 (3%)
Frame = +2
Query: 662 PPXXXXXXXXXRPPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPPGX----PPXRGXP 829
PP PPP P PPP PG P PG PP P
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281
Query: 830 PXGAXPRXXRGGPXXRXPPPGXXPXXXXXXPPXXXXXPXGGXXGPXP 970
P P PPP PP G P P
Sbjct: 282 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 30.7 bits (66), Expect = 0.33
Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 4/107 (3%)
Frame = +2
Query: 662 PPXXXXXXXXXRPPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPPGX----PPXRGXP 829
PP PPP P PPP PG P PG PP P
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHEP 294
Query: 830 PXGAXPRXXRGGPXXRXPPPGXXPXXXXXXPPXXXXXPXGGXXGPXP 970
P P PPP PP G P P
Sbjct: 295 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
Score = 29.5 bits (63), Expect = 0.75
Identities = 25/95 (26%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Frame = +2
Query: 698 PPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPPGX----PPXRGXPPXGAXPRXXRGG 865
PPP P PPP PG P PG PP P P
Sbjct: 209 PPPMHHKPGEHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 866 PXXRXPPPGXXPXXXXXXPPXXXXXPXGGXXGPXP 970
P PPP PP G P P
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 793 PXPXXRGGPPXXXAPPXXGGXXPXGXPPP 707
P GGPP PP G P PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 0.75
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +2
Query: 698 PPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPPGXPPXRGXPPXGAXPRXXRGGPXXR 877
P P P P GG P PP PP PP PP P GG
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP----PP----PAVSAGGSRYY 793
Query: 878 XPPPGXXP 901
P P P
Sbjct: 794 APAPQAEP 801
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +2
Query: 773 PPXXGXXXPPGXPPXRGXPPXGAXPRXXRGGPXXRXPPPGXXPXXXXXXPPXXXXXPXGG 952
PP P P PP P GGP PPPG PP GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPP----PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Frame = -3
Query: 638 PPPPAXX-----PGXXPXGXXPXXXGXRPPPXPGXGXXGGXXAXPP 516
PPPPA P P G PPP P G G PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +1
Query: 817 PGXPPXXGXPPXXXXGXXXPXXPPRGXXXXAXPXAPP 927
P P PP G P PP G P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Frame = -2
Query: 822 PRXGGXPGGXXXPXXGGAPPGXXPP-XXGGGPXXXGXPP 709
P P P GG PP PP G GP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 536 PPXXPXPGXGXAGXPXRPGXXPXGXXXGXR 625
PP P PG AG P P P G R
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +2
Query: 647 PAGXXPPXXXXXXXXXRPPPRGGXPXXXGPPPXXGGXXPGGAPP 778
PA P P P G P PPP G P PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 793 PXPXXRGGPPXXXAPPXXGGXXPXGXPPP 707
P P G PP P G P PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 638 PPPPAXXPGXXPXGXXPXXXGXRPPPXPG 552
PPPP PG P P PPP PG
Sbjct: 9 PPPPPPPPGFEPPSQPP------PPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.0
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +2
Query: 698 PPPRGGXPXXXGPPPXXGGXXPGGAPPXXGXXXPPGXPPXRGXPPXGAXPRXXRGGPXXR 877
PP R P PP P PP PP PP PP A P
Sbjct: 1690 PPVR---PQSAAPPQMSAPTPP---PPPMSVPPPPSAPPMPAGPP-SAPPPPLPASSAPS 1742
Query: 878 XPPPG 892
P PG
Sbjct: 1743 VPNPG 1747
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 793 PXPXXRGGPPXXXAPPXXGGXXPXGXPPP 707
P P PP APP G P PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG-PPSAPPPP 1734
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 813 GGXPGGXXXPXXGGAPPGXXPPXXGGGP 730
GG PGG GGA PG P GP
Sbjct: 612 GGAPGGAPGGMPGGA-PGGAPGGADNGP 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.153 0.531
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,102
Number of Sequences: 5004
Number of extensions: 28975
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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