Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A12
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    29   0.68 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.8  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   3.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.4  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   8.4  

>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 447 ISKTIILVIAKQVLKNFAKKQ-KKHLLCFFSAAG 349
           ++  IIL++ +  +K+  KK  +KHLL FF + G
Sbjct: 12  LASLIILLVGRNAIKSSKKKPFQKHLLVFFGSGG 45


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 472 KNTSNLRINKQNNNFSNC-KTSFEKLCKEAKKTSFVFFLCGRGLIDLQKKKQ 320
           KNT   ++ KQN + S   K+  EKLC +  K   VF      ++ LQK+ +
Sbjct: 675 KNTELQQLLKQNESASELLKSRNEKLCVDYDKLRSVFEEDSSKILSLQKENE 726


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -1

Query: 863 FYMNVQRLM*VFESLCNVIIMNWDNLARSSGPKFDSPCYRYQ*HIHNYIRLNMVLLVGPL 684
           + +N + L    +SL N ++   D ++    P F +P  RY+  + N  R  +   +   
Sbjct: 386 YEVNEKMLHLTSKSLLNTVV-GMDIVSLGKVPLFLTPIVRYKNPVKNKKRSQLTSRISSS 444

Query: 683 VSPHG*VLLCIYSVKLSNFSV 621
           VSP   V+    +  +SNFSV
Sbjct: 445 VSPSN-VIPNSLTSSVSNFSV 464


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 VNIFYAMIPMDPEQLHC*FTKRSNEDH 254
           V  +Y  +  +P +LHC +TK+S   H
Sbjct: 23  VQEYYTYLNKEPNRLHCFYTKKSTLIH 49


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 406 EKLCKEAKKTSFVFFLCGRGLIDLQKKKQYHITNSLIN 293
           E +    K   ++  +CG G  D+   KQ H+  +L+N
Sbjct: 806 EFMISTLKHNGYITLMCGDGTNDVGALKQAHVGVALLN 843


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 451 INKQNNNFSNCKTSFEKLCKEAKKTSFVFFLCGR 350
           + K  +NF     +FE LCK +    F  FL  R
Sbjct: 547 VKKSIDNFLQLTVNFENLCKTSFNMYFPIFLLPR 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,155
Number of Sequences: 5004
Number of extensions: 71086
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)