Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A11
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   1.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.8  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 105 YYLPSWLQLQLVCLYT 58
           YYLP+W  L L  L+T
Sbjct: 30  YYLPNWTDLVLAGLFT 45


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 VVVDLFQSLGPGYYYLPSWLQL 79
           V+V +F    P  Y +PSW+++
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM 297


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 VVVDLFQSLGPGYYYLPSWLQL 79
           V+V +F    P  Y +PSW+++
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM 297


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 VVVDLFQSLGPGYYYLPSWLQL 79
           V+V +F    P  Y +PSW+++
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM 297


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 VVVDLFQSLGPGYYYLPSWLQL 79
           V+V +F    P  Y +PSW+++
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM 297


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 VVVDLFQSLGPGYYYLPSWLQL 79
           V+V +F    P  Y +PSW+++
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM 297


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 VVVDLFQSLGPGYYYLPSWLQL 79
           V+V +F    P  Y +PSW+++
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM 297


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 113 LGIIICHPGCNCN*FVYTHVKNDKILRIPYS 21
           L I IC PGC C      +++N K + +P S
Sbjct: 62  LCIKICAPGCVCR---LGYLRNKKKVCVPRS 89


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 113 LGIIICHPGCNCN*FVYTHVKNDKILRIPYS 21
           L I IC PGC C      +++N K + +P S
Sbjct: 62  LCIKICAPGCVCR---LGYLRNKKKVCVPRS 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,304
Number of Sequences: 438
Number of extensions: 2727
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)