Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A10
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   1.2  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    28   2.0  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   4.7  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   4.7  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
 Frame = +1

Query: 382 TTKRYLWRQIFVSSGVWSIYFVLGLGFGAPTVMIPQIRREANSTDAVT--ESMASWLTSV 555
           T ++ +W  IF++   +S+YF L         ++P+I  + +    +T   S  ++L  +
Sbjct: 369 TIRKRIWWAIFIADKWYSMYFGLATNIHEDDFVVPKIESDESLPLEITSSHSFKTFLKMI 428

Query: 556 HGYSALPWV----FVIPVLTRYI--GRKIPFTIICIVT 651
              S L  +    F +  LTR+    R I + II   T
Sbjct: 429 ELSSLLQDILQDLFTVRALTRHSKNNRSISYQIIGFFT 466


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 698 LLISAIMQGMLLASNMTLLVVIVTEYSSPKYRGVFMIFESTVFFWGVWVANATGAFPT 871
           +++     G   ++ +T++   + +  S KYRG  +   S + F G  V+   G F T
Sbjct: 227 IMMCRFFAGFFASAPLTVVAAALADMYSNKYRGTAITLFSAMVFDGPLVSPIVGGFLT 284


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 590 ITNTHGSAE*PCTEVSHEAMLSVTASVELASLLICGIITVG 468
           +T  HG    PC   +   +++  A  +L S L+ G++T+G
Sbjct: 416 LTADHG----PCVSGAMNTIITTRAGKDLISSLVAGLLTIG 452


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 382 TTKRYLWRQIFVSSGVWSIYFVLGLGFGAPTVMIPQIRREANSTDA 519
           +T R L  Q      VW I F++ + F    + +PQI    +S  A
Sbjct: 153 STSRILSLQRGSQIRVWKIRFIISISFSLAVMFLPQIFDSCDSMRA 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,220
Number of Sequences: 5004
Number of extensions: 70480
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)