Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A05
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.6  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   6.2  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.2  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 118 ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 246
           +ST   + PS+S+S  S S +   +SS  S      SSS+S++
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 121 STRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 246
           S+   S PS+S++  + SP+   +SS  S      SSS+S++
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 764 SLENKISIYTKNNNYLAGASNCSEWMFGNQNKLSKN 657
           S   K+ + ++NN+YL G +  +   F N N +S N
Sbjct: 90  SSPGKLPVPSRNNSYLQGTAESNSGNFAN-NSISNN 124


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 124 TRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 240
           T   S PS+S+S  S SP+   + S  S      SSS+S
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 118 ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 246
           +S+   S PS+S+SK S S     +SS  S      SSS+ ++
Sbjct: 157 SSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,638
Number of Sequences: 5004
Number of extensions: 57988
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)