Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_A04
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 120 1e-27
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 120 1e-27
Z73908-5|CAA98129.2| 325|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 30 1.9
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 30 2.5
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF106582-2|AAC78213.1| 457|Caenorhabditis elegans Hypothetical ... 29 3.3
U42436-8|AAF99897.3| 950|Caenorhabditis elegans Importin beta f... 29 4.4
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 29 5.8
AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical ... 29 5.8
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL161712-2|CAC70128.1| 313|Caenorhabditis elegans Hypothetical ... 28 7.7
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 28 7.7
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 120 bits (289), Expect = 1e-27
Identities = 61/158 (38%), Positives = 93/158 (58%)
Frame = +3
Query: 204 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLA 383
M++QWT +AG LY EIA+ ++LP P W++ FKSRLF+ ++ +Y F VL
Sbjct: 1 MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60
Query: 384 LFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITM 563
+ D VRE KY+ + ++ H++LFRAQRN YI GFA+ L VI+R++T+
Sbjct: 61 ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120
Query: 564 LIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEE 677
L +L+ +E ++QAE K A+T L N+ + E
Sbjct: 121 LGRAAQLEAASEAAMRQAESATKTART--LMNSADTNE 156
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 120 bits (289), Expect = 1e-27
Identities = 61/158 (38%), Positives = 93/158 (58%)
Frame = +3
Query: 204 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLA 383
M++QWT +AG LY EIA+ ++LP P W++ FKSRLF+ ++ +Y F VL
Sbjct: 1 MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60
Query: 384 LFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITM 563
+ D VRE KY+ + ++ H++LFRAQRN YI GFA+ L VI+R++T+
Sbjct: 61 ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120
Query: 564 LIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEE 677
L +L+ +E ++QAE K A+T L N+ + E
Sbjct: 121 LGRAAQLEAASEAAMRQAESATKTART--LMNSADTNE 156
>Z73908-5|CAA98129.2| 325|Caenorhabditis elegans Hypothetical
protein F53B2.4 protein.
Length = 325
Score = 32.7 bits (71), Expect = 0.36
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Frame = +3
Query: 207 SIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAV-YFYVFIGVLA 383
SI +T+++ F L L ++P++ PRR NQ +RL N A+ + Y++ +
Sbjct: 117 SIYFTYVSWL--FPFLLSTLRLIPVYFPRRHNQLC-ARL-----SNFAIPFIYLYPFIFT 168
Query: 384 LFLIDAVREIRKYSNVTDVSHTHL-ATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLIT 560
LI A+ R+ + T +KL N ++ AI+L I +T
Sbjct: 169 FSLIPALGSCRQLLGPYKFGSIFIWFTGNWFDIKLI----NGLVLNLAIWLLLCIISNLT 224
Query: 561 MLIIQDELK-QKAEKIIKQAEETVKQAKTSILANTL 665
+LI +LK + I+++AE ++ S+L + L
Sbjct: 225 LLIKLKKLKNNRKSAILQRAELSLSLTTLSMLLSFL 260
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 685 CCNSSDCKVFARILVLACFTVSSACFIIFSAFCFNSSCIINIVISLRITNV 533
CC + + I++L FT+S+A +F C+N + +++I L IT V
Sbjct: 86 CCGNLRRQFPVNIILLTIFTLSAAVMTMFVTACYN---VQSVLICLCITTV 133
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +3
Query: 531 LTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYDEINS 704
L F+I RL+ + + + ++ K I+ AEE +K A + A+ +++E DE+++
Sbjct: 188 LLFIIGRLLKLNVKEHKISSKRPGIVMSAEE-LKTAPKQLSADEKRAKEKSVLDEVDA 244
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +3
Query: 531 LTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYDEINS 704
L F+I RL+ + + + ++ K I+ AEE +K A + A+ +++E DE+++
Sbjct: 1251 LLFIIGRLLKLNVKEHKISSKRPGIVMSAEE-LKTAPKQLSADEKRAKEKSVLDEVDA 1307
>AF106582-2|AAC78213.1| 457|Caenorhabditis elegans Hypothetical
protein W05F2.2 protein.
Length = 457
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/113 (22%), Positives = 40/113 (35%)
Frame = +3
Query: 513 IGFAIFLTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYD 692
IG+ I + FVI + ++D QKA + K EE + A+ + ++ QH D
Sbjct: 111 IGYGILIAFVIFHIFLYFYLED---QKAREQKKYFEELI--AEQMAARKREEQDDQQHED 165
Query: 693 EINSQXXXXXXXXXXXXDRVKX*RMMSKCGSRNVRKPLPVNPAKEMNXTNQPY 851
E + + + R P+ PA N PY
Sbjct: 166 EEEDERRGTPRAYVVAESKTSNGNVTKVMEKRRSAVAPPITPALGAGSINGPY 218
>U42436-8|AAF99897.3| 950|Caenorhabditis elegans Importin beta
family protein 6 protein.
Length = 950
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 234 YLYFEIALVMLMILPIFSPRRWNQFFKSRLFS-MFRENVAVYFYVFIGVLALFLIDAVRE 410
+L ++A + ++ P RW+ FF FS + +FY+ + +LA+ R+
Sbjct: 100 FLTNKMAHIFSLVFAADFPERWSSFFNDLFFSDNINDRKVAFFYLKV-LLAIDTEVVNRD 158
Query: 411 IRKYSNVTD 437
I++ N +D
Sbjct: 159 IQRSKNESD 167
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 543 IRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYDEINSQ 707
+RR +L + + K+K E +I + VK K + + E LQ E +Q
Sbjct: 393 LRRKARLLTVVEAAKEKLESVISDLQVEVKALKNKVEFLEKERENLQSQSESQTQ 447
>AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical
protein C09E7.4 protein.
Length = 640
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 840 SXYSSPLPGLLAMASSHFCCHILTSSSXISLYPFLTLIGF*FPLIDY 700
S YSS P L +AS+ FCC + +S++ S L L P IDY
Sbjct: 578 SKYSSRFPRLTKIASNVFCC-LSSSTTCESSISELKLFDTHGPEIDY 623
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 841 FVXFISFAGFTGNGFLTFLL 782
FV F SF G TG+GFL+ L+
Sbjct: 141 FVIFHSFGGGTGSGFLSLLM 160
>AL161712-2|CAC70128.1| 313|Caenorhabditis elegans Hypothetical
protein Y66D12A.3 protein.
Length = 313
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 643 VLACFTVSSACFIIFSAFCFNSSCIINIVISLRITNVRKIAKPII 509
+L CF F+I AF S ++NI+ S+ VR KPI+
Sbjct: 265 ILNCFENRLPEFLIDVAFGIESEEVVNIIDSVNSPVVRLTEKPIL 309
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 841 FVXFISFAGFTGNGFLTFLL 782
FV F SF G TG+GFL+ L+
Sbjct: 113 FVIFHSFGGGTGSGFLSLLM 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,570
Number of Sequences: 27780
Number of extensions: 332770
Number of successful extensions: 1075
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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