Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 142 IAPQYDYYNNYD*RLTNTVAVILCVWLRVNRVKS 41
           ++ +YDY NNY   +      I    LR N V S
Sbjct: 55  LSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPS 88


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 142 IAPQYDYYNNYD*RLTNTVAVILCVWLRVNRVKS 41
           ++ +YDY NNY   +      I    LR N V S
Sbjct: 55  LSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPS 88


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 142 IAPQYDYYNNYD*RLTNTVAVILCVWLRVNRVKS 41
           ++ +YDY NNY   +      I    LR N V S
Sbjct: 55  LSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPS 88


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 236 IPSNEGPLYGHI*LLVFGDFLNYYL 162
           +P ++ P   H+  L+F   +++YL
Sbjct: 193 VPEDKCPFTEHLGYLIFSSTISFYL 217


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 654 ANTLQSEELQHYDE 695
           ANT+ +  LQ YDE
Sbjct: 547 ANTISNSSLQDYDE 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,804
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)