Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_A02
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.081
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.19
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.19
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.75
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.00
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.081
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +1
Query: 784 PXSPPXXXPPXXAPSXXQNPXPPXPXKHXXPPXCPPXRKRXAXPSXMTPP 933
P PP P AP+ P PP P PP PP A P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 1.00
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = +3
Query: 717 KXPPPXPXGVQKXXGGXXXXTXAPFPPXXXPPXXXPLXXXKPPPXXPRKTXXPAXLPPXP 896
K PPP P V T AP P PP P+ PPP P PP P
Sbjct: 730 KSPPPPPPAV-------IVPTPAPAPIPVPPP--APIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 683 RGPAPPXTXXNKXAPTXPXRXAKXPXGXXXXXXXPXPPPXKXPXGXPPPXXKTP 844
+ P PP P P P PPP G PPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 784 PXSPPXXXPPXXAPSXXQNPXPPXPXKHXXPPXCPPXRKRXAXPSXMTPPXXXXXPP 954
P S P P AP P PP P PP P PS PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP-AGPPSAPPPPLPASSAP 1741
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +1
Query: 841 PXPPXPXKHXXPPXCPPXRKRXAXPSXMT-PPXXXXXPPXP 960
P PP P PP P R PS + PP PP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
Score = 30.3 bits (65), Expect = 0.43
Identities = 19/65 (29%), Positives = 22/65 (33%)
Frame = +3
Query: 708 P*TKXPPPXPXGVQKXXGGXXXXTXAPFPPXXXPPXXXPLXXXKPPPXXPRKTXXPAXLP 887
P T PP + AP P PP P K PP P P+ +P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP---SLPSAVP 195
Query: 888 PXPXK 902
P P K
Sbjct: 196 PMPPK 200
Score = 26.6 bits (56), Expect = 5.3
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Frame = +1
Query: 679 PKGSRPPPXXXKQXRPHPXQXXCKKXXGXXXXXXXPXSP--PXXXPPXXAPSXXQNPXPP 852
P S PP P K P P P PP APS + PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS-APSLP-SAVPP 196
Query: 853 XPXKHXXPPXCP-PXRKRXAXPSXMTPP 933
P K PP P + PS PP
Sbjct: 197 MPPKVPPPPLSQAPVANTSSRPSSFAPP 224
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.75
Identities = 26/105 (24%), Positives = 30/105 (28%)
Frame = +2
Query: 608 PPXPKXXPXKXXXAKXXRLXRPXXQRGPAPPXTXXNKXAPTXPXRXAKXPXGXXXXXXXP 787
PP PK K P APP + AP P P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 788 XPPPXKXPXGXPPPXXKTPXXXPPXNTGTRXXAPXXXKGXPXLXP 922
P P P P P P P ++G P G P + P
Sbjct: 1152 VPAPSGAPP-VPKPSVAAP-PVPAPSSGI-PPVPKPAAGVPPVPP 1193
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +1
Query: 784 PXSPPXXXPPXXAPSXXQNPXPPXPXKHXXPPXCP---PXRKRXAXPSXMTPP 933
P +PP PP + +P P H PP P P A P PP
Sbjct: 963 PAAPPSIPPPLPVSNILSSPTSEPPKDH--PPSAPLSKPVSTSPAAPLARVPP 1013
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/77 (24%), Positives = 21/77 (27%)
Frame = +2
Query: 692 APPXTXXNKXAPTXPXRXAKXPXGXXXXXXXPXPPPXKXPXGXPPPXXKTPXXXPPXNTG 871
APP + AP P P P P P P P P PP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA- 1197
Query: 872 TRXXAPXXXKGXPXLXP 922
P G P + P
Sbjct: 1198 --PPVPKPSVGVPPVPP 1212
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/73 (26%), Positives = 21/73 (28%)
Frame = +2
Query: 692 APPXTXXNKXAPTXPXRXAKXPXGXXXXXXXPXPPPXKXPXGXPPPXXKTPXXXPPXNTG 871
APP + AP P + P P PP P P P PP
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP---S 1214
Query: 872 TRXXAPXXXKGXP 910
T P G P
Sbjct: 1215 TAPPVPTPSAGLP 1227
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +1
Query: 790 SPPXXXPPXXAPSXXQNPXPPXPXKHXXPPXCPPXRKRXAXPSXMTP--PXXXXXPPXP 960
+PP P P PP P P PP PS P P PP P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP---VPAPSSEIPSIPAPSGAPPVP 1086
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.00
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = +3
Query: 723 PPPXPXGVQKXXGGXXXXTXAPFPPXXXPPXXXPLXXXKPPPXXPRKTXXPAXLPPXPXK 902
PPP P G P PP P +PPP + PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 903 ARRA 914
R A
Sbjct: 397 GRSA 400
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +1
Query: 784 PXSPPXXXPPXXAPSXXQNPXPPXPXKHXXPPXCPPXR-KRXAXPSXMTPP-XXXXXPPX 957
P S P PP PS PP P PP R P M P PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL 292
Query: 958 P 960
P
Sbjct: 293 P 293
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Frame = +1
Query: 808 PPXXAPSXXQNPXPPX---PXKHXXPPXCPPXRKRXAXPSXMTPPXXXXXPPXP 960
PP PS PP PP PP R A S PP PP P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG-SIPLPPQGRSAPPPP 364
Score = 27.1 bits (57), Expect = 4.0
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Frame = +1
Query: 784 PXSPPXXXPPXXAPSXX------QNPXPPXPXKHXXPPXCPPXRKRXAXPSXMT------ 927
P +PP P AP+ + PP P PP PP A PS
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 928 --PPXXXXXPPXP 960
PP PP P
Sbjct: 448 PLPPSAPIAPPLP 460
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = +1
Query: 808 PPXXAPSXXQNPXPPXPXKHXXPPXCPPXRKRXAXPSXMTPPXXXXXPPXP 960
PP PS + K PP PP R+ P PP P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +1
Query: 793 PPXXXPPXXAPSXXQNPXPPXPXKHXXPPXCPPXRKRXAXPSXMTPP 933
P P S NP PP + PP PP S PP
Sbjct: 81 PYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPP 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.140 0.488
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,984
Number of Sequences: 5004
Number of extensions: 19590
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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