Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_A01
         (1080 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.67 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.90 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   6.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 140 PPXPXPPPPP 169
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 134 PXPPXPXPPPPPXPXAP 184
           P  P P PPPPP    P
Sbjct: 338 PPKPAP-PPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 217 PPPPPPXRXXP 249
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 107  RXAGXPPXHPXPPXPXPPPPP 169
            R  G     P    P PPPPP
Sbjct: 1843 RSVGSARNIPVSGSPEPPPPP 1863



 Score = 22.2 bits (45), Expect(2) = 0.90
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 214  PPPPPPPXR 240
            P PPPPP R
Sbjct: 1857 PEPPPPPPR 1865



 Score = 21.0 bits (42), Expect(2) = 0.90
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 103  PXAGWXPPPPPXP 141
            P +G   PPPP P
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 214  PPPPPPP 234
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 214  PPPPPPP 234
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 323  TPPRXAXRXNXPPPPXP 373
            T  R A R   PPPP P
Sbjct: 1344 TLERTAWRQQQPPPPPP 1360


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +2

Query: 599 HHXXAPPXPXKSRPDAXKPXPAXENRDXPPXXPG 700
           HH  + P    S P A +      +   PP  PG
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPG 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.138    0.491 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,710
Number of Sequences: 438
Number of extensions: 8107
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36150300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)