Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P24
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    40   4e-04
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    29   0.69 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    29   1.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    28   1.6  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   3.7  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   6.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   8.5  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
 Frame = +2

Query: 506 MSTSNANRPQVPLRQKDFDQI---WGDLQEGIEQVYKK--QYMVKRRYIDLYTHVYNYC 667
           M+T N N   +P+ +K +D +   W  L+ G+ Q++++  + M   +Y++LYT ++NYC
Sbjct: 1   MTTLNTNDKDLPIVKK-YDSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHNYC 58


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 614 YMVKRRYIDLYTHVYNYCTSVHHHS 688
           Y++ + Y+  YTH+Y Y  +++H +
Sbjct: 172 YVLTKSYLAKYTHIYRYYQTIYHQA 196


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 88  WTISSSLQIKRNNSHNLKDSLNGH 17
           WT SSSLQ  R N H+   SL  H
Sbjct: 243 WTSSSSLQHTRENLHDSTSSLRDH 266


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 246 CSTRFHAVIDHITLFY-VLDAIRLSLFYYTTIYNHDSSNF 130
           C T+F A ID+I+L Y  L  I   L  Y   +   S NF
Sbjct: 296 CLTKFPATIDYISLHYDFLGQISSHLSSYKEKFEESSKNF 335


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 213 ITLFYVLDAIRLSLFY--YTTI-YNHDSSNFIQFGNTYTCRPCYFGPF 79
           I  FY L     S+++  YT I Y+    ++  F NT T   C FG F
Sbjct: 377 IDFFYYLAGYLQSMYFTTYTWILYDWSYRDWTYFNNTMTIALCVFGVF 424


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 575 DLQEGIEQVYKKQYMVKRRYIDLYTHVYNY 664
           D  +G+E VYKK+YM KR   D+  H+ ++
Sbjct: 145 DAVQGVE-VYKKKYMSKR---DIQEHIQDF 170


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 805  VQFQTNELSPALLD 764
            V FQTN LSPALL+
Sbjct: 2997 VDFQTNSLSPALLN 3010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,530,370
Number of Sequences: 5004
Number of extensions: 71322
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)