Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P24
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical pr...    49   5e-06
U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.        49   5e-06
Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical pr...    47   2e-05

>Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical
           protein D2045.6 protein.
          Length = 780

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +2

Query: 554 DFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSV 676
           D + +W  LQ+G++  Y+++ M  + Y+ LYT VY+YCTS+
Sbjct: 12  DSEVVWKKLQDGLDVAYRRENMAPKDYMTLYTSVYDYCTSI 52


>U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.
          Length = 780

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +2

Query: 554 DFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSV 676
           D + +W  LQ+G++  Y+++ M  + Y+ LYT VY+YCTS+
Sbjct: 12  DSEVVWKKLQDGLDVAYRRENMAPKDYMTLYTSVYDYCTSI 52


>Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical
           protein K08E7.7 protein.
          Length = 729

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 17/48 (35%), Positives = 33/48 (68%)
 Frame = +2

Query: 560 DQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHHSAGSSS 703
           + +WG LQ+G+  +Y++++M K+ Y+ LY  VYN CT+    ++ ++S
Sbjct: 4   EAVWGTLQDGLNLLYRREHMSKKYYMMLYDAVYNICTTTTLANSNNNS 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,653
Number of Sequences: 27780
Number of extensions: 394864
Number of successful extensions: 969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)