Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P22
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    90   3e-19
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    90   3e-19
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   8.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   8.2  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 43/69 (62%), Positives = 50/69 (72%)
 Frame = +2

Query: 116 TKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQ 295
           TKT         EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   
Sbjct: 6   TKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGP 65

Query: 296 VRGISIKLQ 322
           VRGIS KLQ
Sbjct: 66  VRGISFKLQ 74



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +3

Query: 345 DNYVPEVSALEHDIIEVDPDTKGYVEDAGLQQ 440
           D YVPEVS LE D + VD DTK  ++  G  Q
Sbjct: 82  DQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQ 113


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 43/69 (62%), Positives = 50/69 (72%)
 Frame = +2

Query: 116 TKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQ 295
           TKT         EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   
Sbjct: 6   TKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGP 65

Query: 296 VRGISIKLQ 322
           VRGIS KLQ
Sbjct: 66  VRGISFKLQ 74



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +3

Query: 345 DNYVPEVSALEHDIIEVDPDTKGYVEDAG 431
           D YVPEVS LE D I VD DTK  ++  G
Sbjct: 82  DQYVPEVSELEKDKINVDQDTKDMLKALG 110


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 237 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 127
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 279 VSDTRKCEESLSNFXXXXXXXXDNYVPEVSALEHDIIEVDPDTKGYVED 425
           VSDTR   E +  F        DNY     ALE ++   + + +   ED
Sbjct: 833 VSDTRLRLERMHKFIEKDQESIDNYEQNREALESEVATAEAELELLKED 881


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +1

Query: 286 TLASARNLYQTSXKRSVRGVTTMSQKCLLSNMTSSK*TPTPRDMLKMLDFNN 441
           +LAS +NL   +  R +R  + +++KC+    ++ K  P  +D  ++ DF +
Sbjct: 247 SLASRKNLCINNEVRKLRPTSALNEKCIELQGSAHK-CPFLQDNTQLWDFRD 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,572
Number of Sequences: 5004
Number of extensions: 42700
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)