Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P22
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    97   1e-20
U23525-4|AAU05558.1|  455|Caenorhabditis elegans Nematode astaci...    31   1.1  
U23525-3|AAC46566.2|  579|Caenorhabditis elegans Nematode astaci...    31   1.1  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/69 (65%), Positives = 52/69 (75%)
 Frame = +2

Query: 116 TKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQ 295
           TKTV        EKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    
Sbjct: 6   TKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGP 65

Query: 296 VRGISIKLQ 322
           VRGISIKLQ
Sbjct: 66  VRGISIKLQ 74


>U23525-4|AAU05558.1|  455|Caenorhabditis elegans Nematode astacin
           protease protein11, isoform b protein.
          Length = 455

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 279 VSDTRKCEESLSNFXXXXXXXXDNYVPEVSALEHDIIEVDPDTKGYVEDAG 431
           V D ++ EE +  F           VP++  +E  +  VDP  KG++E+AG
Sbjct: 131 VPDQKELEEMIGQFSKGGIGRFLKRVPKIY-IEDPLARVDPKLKGFLENAG 180


>U23525-3|AAC46566.2|  579|Caenorhabditis elegans Nematode astacin
           protease protein11, isoform a protein.
          Length = 579

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 279 VSDTRKCEESLSNFXXXXXXXXDNYVPEVSALEHDIIEVDPDTKGYVEDAG 431
           V D ++ EE +  F           VP++  +E  +  VDP  KG++E+AG
Sbjct: 131 VPDQKELEEMIGQFSKGGIGRFLKRVPKIY-IEDPLARVDPKLKGFLENAG 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,499
Number of Sequences: 27780
Number of extensions: 250093
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)