Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P20
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.39 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 336 QPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGA 437
           QPG    QQ  A  + G+  +P + +    P GA
Sbjct: 218 QPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGA 251


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 628 SYA*NISLHMFRGEEKKMPFKTLRCAVPVLKRVRWLESRDGVIPPNAVMGGTLQLV 795
           +YA N SLH  R     +    L CA     RV+   S     P   V+GG+   V
Sbjct: 29  TYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAG---PIFGVIGGSYSSV 81


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 628 SYA*NISLHMFRGEEKKMPFKTLRCAVPVLKRVRWLESRDGVIPPNAVMGGTLQLV 795
           +YA N SLH  R     +    L CA     RV+   S     P   V+GG+   V
Sbjct: 119 TYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAG---PIFGVIGGSYSSV 171


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 170 KSNENTMFSQNNVKYKNF 117
           +S E  + S NN  YKN+
Sbjct: 297 RSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 170 KSNENTMFSQNNVKYKNF 117
           +S E  + S NN  YKN+
Sbjct: 308 RSKETKIISSNNYNYKNY 325


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 438 FGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGY 560
           F Y  Y Y   TQ+ ++ I  +PT      I+    + AGY
Sbjct: 27  FDYYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGY 67


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 333 FQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYD 485
           F+PG  LG+Q   +S P +       RG +   GA+G +  P V   +  D
Sbjct: 171 FEPGKGLGKQLQGISTP-VEAHLRKGRGAI---GAYGPEKGPKVPEKKKED 217


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 218 PTPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPT 340
           P PR N    L SC C        +  L C     +T +PT
Sbjct: 49  PAPRINSKSPLLSCACPDGLKL-LSDGLMCVEKVSTTIVPT 88


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 578  SPLGDQVSVPRRSNPRQVMRETFLCICSV 664
            SP+ +Q S+PRR    +    T L   SV
Sbjct: 1830 SPMSEQKSLPRRGRSSRSSLRTLLPPISV 1858


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 578  SPLGDQVSVPRRSNPRQVMRETFLCICSV 664
            SP+ +Q S+PRR    +    T L   SV
Sbjct: 1826 SPMSEQKSLPRRGRSSRSSLRTLLPPISV 1854


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,341
Number of Sequences: 438
Number of extensions: 6263
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)