Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P19
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    57   4e-09
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    26   6.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   8.1  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
 Frame = +1

Query: 199 WVIERVVSAALVP--LIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPI 372
           W  ER+++ A+VP  +IPL     + L D+ LA  +  H+  G E+  +DY  A  F  +
Sbjct: 88  WDFERIIAIAMVPQVMIPLFTGTSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKKL 147

Query: 373 LPKIAIGLVYLISIATLGGLFYIISHDVGIANGIRQFW 486
            P +   ++   ++ TL G++   ++D+G+  GI++ W
Sbjct: 148 SP-LMHWILRGCTVLTLIGVYEFNTNDIGLTEGIKKLW 184


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 121 ILNAIRSFRTSCVRRSAEKVEDHSRL 198
           +LNA  S RT+C RR  + +E H+ +
Sbjct: 5   VLNAQVSIRTACCRRWIDCIECHNEI 30


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 358 IFGPILPKIAIGLVYLISIATLGGLFYIISHDVGIANGIRQFWAIKSDAQKS*VPFFCRF 537
           +F  +   I   L+Y+ S AT   +FY + + +  A  +   + +      + +  FC+F
Sbjct: 773 VFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVDYA-IERFCQF 831

Query: 538 T 540
           T
Sbjct: 832 T 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,568
Number of Sequences: 5004
Number of extensions: 58206
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)