Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_P15
(986 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.25
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.25
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.8
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.1
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 9.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.25
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = +1
Query: 580 GXPPKXGRLPXIXXPPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGX 759
G PP P + PP P P PP P + PP P + P P
Sbjct: 1090 GIPPVPK--PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA-PPVPVPSGAPPVPKPS 1146
Query: 760 XNXXPXAXPXAXPP 801
P P PP
Sbjct: 1147 VAAPPVPAPSGAPP 1160
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 22/74 (29%)
Frame = +1
Query: 622 PPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGXXNXXPXAXPXAXPP 801
PP P P + P P PP P + P P P P PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 802 XGGXXFFPTXGRPP 843
P+ G PP
Sbjct: 1219 VP----TPSAGLPP 1228
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 622 PPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGXXNXXPXAXPXAXPP 801
PP P VA PP P + PP P + P P P P PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKP-SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 607 PXIXXPPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGXXNXXPXAXP 786
P PP P P PP P G PP P + P P P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG-VPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Query: 787 XAXPP 801
A P
Sbjct: 1233 TAKAP 1237
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = +1
Query: 580 GXPPKXGRLPXIXXPPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGX 759
G PP P + PP P P A P PP + PP P P
Sbjct: 1157 GAPPVPK--PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA-PPVPKPSVGVPPVPPP 1213
Query: 760 XNXXPXAXPXAXPP 801
P P A P
Sbjct: 1214 STAPPVPTPSAGLP 1227
Score = 25.8 bits (54), Expect = 9.4
Identities = 26/105 (24%), Positives = 27/105 (25%), Gaps = 4/105 (3%)
Frame = +3
Query: 681 PXXPPXRGEFPPXXXPXXEXXXPTRXX*XXPXGXPPGXXPXGGXXXXXXXXXXXREXXPX 860
P P PP P P P P G P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP- 1179
Query: 861 KXPPPXNRGGVAP-NPPXXXYPXPPXXXNXPXXXPP---XPLPXP 983
P P GV P PP P P P PP P+P P
Sbjct: 1180 --PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.25
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = +1
Query: 622 PPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGXXNXXPXAXPXAXPP 801
PPPP P + PP P GG PP P + P P P A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP-----PPPPPPPPAVSA 787
Query: 802 XGGXXFFPTXGRPP 843
G + P P
Sbjct: 788 GGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 861 KXPPPXNRGGVAPNPPXXXYPXPPXXXNXPXXXPPXPLP 977
K PPP + P P P PP PP P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -2
Query: 787 GGXPXGXXYXSRVGSXXSHXGXWXGGNSPRXGGXXGXSPPXXXFXGXFAFXGGGG 623
GG G +G+ H G GG GG G PP G F GG G
Sbjct: 164 GGLALGGLASHALGNLFHHRGH-NGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.0
Identities = 24/88 (27%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Frame = +1
Query: 571 RKXGXPP--KXGRLPXIXXPPPPXKKQXTXXXPX----RVAXPPXXP---PXGGSFPPXX 723
R G PP + PPPP + P R A PP P P G PP
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPL 379
Query: 724 XPXXSXPXPHGXXNXXPXAXPXAXPPXG 807
+ P P A PP G
Sbjct: 380 SSSRAVSNPPAPPPAIPGRSAPALPPLG 407
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Frame = +1
Query: 661 PXRVAXPPXXPPXGGSFPPXXXPXXSXPXP-------HGXXNXXPXAXPXAXPPXGGXXF 819
P + PP P S PP P S P P +G + P + P P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Query: 820 FPTXGRPP 843
+ +PP
Sbjct: 284 INSTSKPP 291
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +3
Query: 855 PXKXPPPXNRGGVAPNPPXXXYPXP--PXXXNXPXXXPPXPLP 977
P PP P PP P P P P PP PLP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = +1
Query: 598 GRLPXIXXPPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHGXXNXXPX 777
G P PP + Q P +++ P PP S PP P + P P G + P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAA--PPQMSAPTPPPPP-MSVPP---PPSAPPMPAGPPSAPPP 1733
Query: 778 AXPXAXPP 801
P + P
Sbjct: 1734 PLPASSAP 1741
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 885 GGVAPNPPXXXYPXPPXXXNXPXXXPPXPLPXPL 986
GG+AP P P P P P P P P+
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPM 1712
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 970 GXGGXXXGXFXXWGGXGXXXXGGFGATPPRFXGGGXXXG 854
G GG G GG G GGFG GGG G
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/53 (26%), Positives = 18/53 (33%)
Frame = +1
Query: 598 GRLPXIXXPPPPXKKQXTXXXPXRVAXPPXXPPXGGSFPPXXXPXXSXPXPHG 756
G + PPP T P + + P + PP P S P P G
Sbjct: 88 GNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSYAPPPSGRPRISYPYPPG 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,384
Number of Sequences: 5004
Number of extensions: 22467
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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