Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P13
         (986 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.35 
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   3.3  
08_01_0156 - 1233431-1233925                                           29   7.5  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    29   7.5  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    28   10.0 
03_06_0149 - 31987183-31987630,31987813-31987874                       28   10.0 
03_04_0061 - 16949038-16950006                                         28   10.0 

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -2

Query: 667 NGGXVHTAQLGANDXHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 488
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 487 LVS 479
             S
Sbjct: 137 RAS 139


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 502 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 383
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 640 LGANDXHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 467
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 466 RVSPPLT 446
           R SP ++
Sbjct: 149 RASPTVS 155


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 230 VNFLVDSVPSRELFCKNSLWH 168
           VN+L   VPSR +F K   WH
Sbjct: 59  VNYLKSGVPSRVMFYKQGSWH 79


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 392 RFSIGSAPLDEHHKNRRSSQRWRNP 466
           RFS  SAP+D+H + RR      NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 595 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 494
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 469 RTIKIPGVSPWKLPRALSCSDPXAYRIPVRLSPFGKRGA 585
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,115,815
Number of Sequences: 37544
Number of extensions: 481064
Number of successful extensions: 1209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)