Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P12
         (1188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0271 + 13618149-13618297,13618311-13618560                       31   1.8  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   3.1  
11_01_0066 - 536281-537196,537397-537452                               29   5.4  
06_01_0145 + 1092764-1093351                                           29   7.2  
06_01_0178 + 1386981-1387505                                           29   9.5  
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     29   9.5  

>06_02_0271 + 13618149-13618297,13618311-13618560
          Length = 132

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
 Frame = -1

Query: 675 WXPLXAGRGGSGAXXGXKXXRTXRTXRXGR-XXEGGDXXGGGTXRRGXVXXGPXXG 511
           W     GRGG G   G       R    GR   EGG   GGG    G    G   G
Sbjct: 23  WRGRWRGRGGGGEGGGEVEAAVERAAERGRGGGEGGGGEGGGEGGDGGTEGGGDGG 78


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 20/70 (28%), Positives = 21/70 (30%)
 Frame = +2

Query: 395 AQXXXPNXXPPPSQPXTXXSXXPXXXWGXXGXFXXSEPTPXXGPXXTXPRRXVPPPXXSP 574
           A    P   PPP  P       P            S P P   P        +PPP   P
Sbjct: 581 ASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPP 640

Query: 575 PSXXLPXRXV 604
           P   LP R V
Sbjct: 641 PPPSLPNRLV 650


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 491 FXXSEPTPXXGPXXTXPRRXVPPPXXSPPSXXLP 592
           +  S+P P   P    P R +PP    PPS   P
Sbjct: 190 YFDSDPAPPTPPTIARPPRPLPPASPPPPSIATP 223


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 657 GRGGSGAXXGXKXXRTXRTXRXGRXXEGGDXXGGG 553
           GRGG G   G          R GR  +GG+  GGG
Sbjct: 145 GRGGRGGRGGSGGFGGGDGGRGGRGGDGGEGRGGG 179


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 657 GRGGSGAXXGXKXXRTXRTXRXGRXXEGGDXXGGGTXRRG 538
           G GG G   G K  R       G    GGD   GG   RG
Sbjct: 93  GGGGGGGGKGRKGGRGGDGGSGGAGGRGGDGGSGGQGGRG 132


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = -1

Query: 591 GRXXEGGDXXGGGTXRRGXVXXGPXXGVGSEXXNXPXXPHXXLGXXEXXVXGWLGGG 421
           GR   GG   GGG  R G        GVG      P       G       G+ GGG
Sbjct: 13  GRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGG 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,163
Number of Sequences: 37544
Number of extensions: 170047
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)