Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P10
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   2.0  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   6.2  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 717 RLKCYT*ECPKLSFLKXXNRKQTEHTKTCISSRVCIFCNLA 595
           R  C   +CPK SF +  + ++ E T   + +  C FCN A
Sbjct: 25  RFYCTYPDCPK-SFTRKEHLRRHERTHENVKAFSCSFCNRA 64


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +3

Query: 651 FVSDFXXLKNLTW--DILMCNISIELX--FFKCFI*KLNAGNHEXY--VCKVCKNVCI*E 812
           F  +F  ++   W  ++   NI+ E    FF CF+  + AGN + +  +    K  CI  
Sbjct: 452 FADNFCNIQKSHWLPEVFRDNITGETPETFFDCFLPTIEAGNSQWWELLPLYTKAGCITN 511

Query: 813 NLKRN 827
           NL  N
Sbjct: 512 NLNEN 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,595
Number of Sequences: 5004
Number of extensions: 60930
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)