Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P10
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 432 RLLRPPFRVIFLFHQAQTTNQPSQEFTKSPI-EH*NNCRVQ 313
           R  R PFR I  F  +   +   +EF +S   +  NNC ++
Sbjct: 432 RDFRKPFREILYFRCSNLNHMMREEFYQSQYGDPINNCEIK 472


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 597 ALILFTVKSCTFFLS*LLV 541
           ALI+ TV SCT  LS +++
Sbjct: 315 ALIVCTVNSCTSMLSGIVI 333


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 597 ALILFTVKSCTFFLS*LLV 541
           ALI+ TV SCT  LS +++
Sbjct: 368 ALIVCTVNSCTSMLSGIVI 386


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 665 KIGNKQNIQKHVFPLEYVSFVIWLLF 588
           KI    N  KH+    Y + VIWL F
Sbjct: 839 KIPEAFNESKHIGFTMYTTCVIWLAF 864


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 383 KPQTNQAKSSPSHQSSIKTTV 321
           KPQT    +SP H S  K  +
Sbjct: 252 KPQTKTKPTSPYHVSDHKAAI 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,450
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)