Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P08
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 364 APRDKQSKRSFSRGSVACVIARALFCI 284
           A +D++ +  F    VA V  RAL C+
Sbjct: 409 AEQDRRERMEFDWKQVALVSDRALLCV 435


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 478  IKVKPKNSSVNSTQTVVAQSVLMNSLLKSVLPCRN 582
            +KV+ +  S  S Q    Q+++ N   KS+L   N
Sbjct: 970  VKVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTAN 1004


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 381 VPRSLKHLGTSKASAVSPED 322
           +P++L  +GTS  S V P D
Sbjct: 467 IPQNLGVIGTSNLSLVFPND 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,702
Number of Sequences: 438
Number of extensions: 2918
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)