Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P05
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023261-1|AAY55677.1|  110|Drosophila melanogaster IP02710p pro...    95   2e-19
AE014134-1428|AAF52619.1|  110|Drosophila melanogaster CG8396-PA...    95   2e-19
U18971-1|AAC46989.1|   98|Drosophila melanogaster p31A protein.        71   3e-12
U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial ...    29   6.5  
U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase...    29   6.5  
AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p pro...    29   6.5  
AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA...    29   6.5  

>BT023261-1|AAY55677.1|  110|Drosophila melanogaster IP02710p
           protein.
          Length = 110

 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 8/95 (8%)
 Frame = +3

Query: 306 GPEDRNPPAEKKAKMADRTNDKEP--------TWVLQGKKLLKVREFKGKVYVDIREFYE 461
           GP+DR  PA KKAK +D  N            +W L+G + +++ EF+G+  VDIREFY+
Sbjct: 16  GPDDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYD 75

Query: 462 KNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSS 566
           K G++LPGKKGISL+  QW+KLL V EEV   + +
Sbjct: 76  KGGQILPGKKGISLSLIQWKKLLEVAEEVTRAIEN 110


>AE014134-1428|AAF52619.1|  110|Drosophila melanogaster CG8396-PA
           protein.
          Length = 110

 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 8/95 (8%)
 Frame = +3

Query: 306 GPEDRNPPAEKKAKMADRTNDKEP--------TWVLQGKKLLKVREFKGKVYVDIREFYE 461
           GP+DR  PA KKAK +D  N            +W L+G + +++ EF+G+  VDIREFY+
Sbjct: 16  GPDDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYD 75

Query: 462 KNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSS 566
           K G++LPGKKGISL+  QW+KLL V EEV   + +
Sbjct: 76  KGGQILPGKKGISLSLIQWKKLLEVAEEVTRAIEN 110


>U18971-1|AAC46989.1|   98|Drosophila melanogaster p31A protein.
          Length = 98

 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 8/71 (11%)
 Frame = +3

Query: 306 GPEDRNPPAEKKAKMADRTNDKEP--------TWVLQGKKLLKVREFKGKVYVDIREFYE 461
           GP+DR  PA KKAK +D  N            +W L+G + +++ EF+G+  VDIREFY+
Sbjct: 16  GPDDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYD 75

Query: 462 KNGELLPGKKG 494
           K G++LPGKKG
Sbjct: 76  KGGQILPGKKG 86


>U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial DNA
            polymerase catalyticsubunit precursor protein.
          Length = 1145

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 755  AFFHCILVGVVXTHQCILSCXDPINPH 675
            AFF  + V  V   +C + C  P NPH
Sbjct: 1082 AFFSSVEVDTVLRKECTMDCKTPSNPH 1108


>U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase
            gamma protein.
          Length = 1145

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 755  AFFHCILVGVVXTHQCILSCXDPINPH 675
            AFF  + V  V   +C + C  P NPH
Sbjct: 1082 AFFSSVEVDTVLRKECTMDCKTPSNPH 1108


>AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p protein.
          Length = 1145

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 755  AFFHCILVGVVXTHQCILSCXDPINPH 675
            AFF  + V  V   +C + C  P NPH
Sbjct: 1082 AFFSSVEVDTVLRKECTMDCKTPSNPH 1108


>AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA
            protein.
          Length = 1145

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 755  AFFHCILVGVVXTHQCILSCXDPINPH 675
            AFF  + V  V   +C + C  P NPH
Sbjct: 1082 AFFSSVEVDTVLRKECTMDCKTPSNPH 1108


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,133,844
Number of Sequences: 53049
Number of extensions: 427600
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)