Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_P03
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 229 3e-61
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 30 0.51
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.3
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 23 7.3
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.3
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 8.3
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 229 bits (561), Expect = 3e-61
Identities = 105/149 (70%), Positives = 126/149 (84%), Gaps = 1/149 (0%)
Frame = +3
Query: 207 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 386
YK+AD LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6 YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65
Query: 387 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 563
L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L FP GKP
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125
Query: 564 LNMILDDGGDLTNLVHTKYPDLLKDVKGI 650
LNMILDDGGDLT LVH ++P+LL D++GI
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGI 154
Score = 93.5 bits (222), Expect = 4e-20
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = +1
Query: 670 GVHNLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCRESLLDGIKRAXT**LRGKL 837
GVHNLYKMF+E LKVPAINVNDSVTKSKFDNL+GC+ESL+DGIKRA + GK+
Sbjct: 161 GVHNLYKMFKENKLKVPAINVNDSVTKSKFDNLFGCKESLVDGIKRATDVMIAGKV 216
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 29.9 bits (64), Expect = 0.51
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = -2
Query: 338 YSGTFEYFSWSIFPTTCHKAWHFFLC*H------NFFSAPFSQFLVSDFVRRLHFVVQSL 177
Y + ++W F T +K H+FL H +F S S F LH +V
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGC 415
Query: 176 IYLXVNSLAVFF 141
I L + +FF
Sbjct: 416 ITLKIRGYGLFF 427
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 110 YFRYFNKNNLKRKQQV---NLPVGISNFVLQNEASLQNR*REIG*MGPKRNYVSRERNAR 280
YF N +N++ K++ NL +S F E + QN + + K++ + ++RN
Sbjct: 174 YFDVINDSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQD 233
Query: 281 PYGMSSEICSS*NTQRCQNSRQLTHD 358
+++E S N HD
Sbjct: 234 ETQLTTEEDFSANNDSTAKIETSIHD 259
>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 815 VXALLIPSSKDSLHPYKLSNLLFVTESLTLIAGTFKSPSRNILYKLCTPGCSFFSDTF 642
+ A ++ + P+ L+ + E+ + + +S SR+I Y L PG FFS F
Sbjct: 24 IDAFAATAASAMISPFILTIDRSIVENTSGRSTLLRSVSRSIKYVLSKPGAFFFSAPF 81
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 68 SCARERVLQYQVPIYFRYFNKNNLKRKQQVNLPVGISNFVLQ 193
S + +L+ V YFRY + +LK +Q++ L +S+ L+
Sbjct: 665 SVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLEFLSSDTLR 706
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 23.4 bits (48), Expect(2) = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 24 IGNSLRFDSSKIRSVLVHANAFYNIKSQFISGILIKITSKENS 152
+ NSL++ V+ + +I+ QF+S I+ +IT ++ S
Sbjct: 954 VRNSLKYLLDDFTKVITKTFSIKSIRLQFLSLIIYEITYEQLS 996
Score = 20.6 bits (41), Expect(2) = 7.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 207 YKIADEKLAEWGRKEIMLAEKEM 275
Y+I E+L+ W R+ +L+ E+
Sbjct: 988 YEITYEQLSSWYRERTILSFLEL 1010
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 643 FTSFKRSGYLVWTKFVKSPPSSKIILRGF 557
+ F++ G L + K VK P + + + RGF
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +2
Query: 248 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 427
R+Y R ++PY S SS S ++ STNS N SR T + +
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149
Query: 428 H 430
H
Sbjct: 150 H 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,554,914
Number of Sequences: 5004
Number of extensions: 73566
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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