Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P02
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.97 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   9.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   9.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
 Frame = +1

Query: 673 PPPPPGXXXSXXFPX---PPPPX---PPXXPPXAPP 762
           P P P    S   P    PP P    PP  PP APP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 712 PXPPPPXPPXXPPXAPPXWGGXXPPPG 792
           P P P   P  P    P      PPPG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPG 49



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 718 PPPPXPPXXPPXAPP 762
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = +3

Query: 567 GXGPXP---PPXGGXXXXPPXRGGSPRXXPPGXG 659
           G  P P   PP GG    PP +  S     P  G
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 804  PPPPPPXXPPXS 839
            PPPPPP  PP S
Sbjct: 1355 PPPPPP--PPSS 1364


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 718 PPPPXPPXXPP 750
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +1

Query: 640 TXPXXXGXXXXPPPPPGXXXSXXFPXPPPPXP 735
           T P        P   PG       P P PP P
Sbjct: 26  TRPTRLRREAKPEAEPGNNRPVYIPQPRPPHP 57


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +1

Query: 640 TXPXXXGXXXXPPPPPGXXXSXXFPXPPPPXP 735
           T P        P   PG       P P PP P
Sbjct: 27  TRPTRLRREAEPEAEPGNNRPVYIPQPRPPHP 58


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +1

Query: 640 TXPXXXGXXXXPPPPPGXXXSXXFPXPPPPXP 735
           T P        P   PG       P P PP P
Sbjct: 27  TRPARLRREAKPEAEPGNNRPIYIPQPRPPHP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.155    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,652
Number of Sequences: 438
Number of extensions: 8359
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)