Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_P01
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.70 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.92 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 92  LFXVXXLLSFXLPRLAXGCKPCPINTRCCXCPARXLQSPQWFYKTXAXCXTXI 250
           LF +   L   LP    G    P NTR C  P   L++  W       C T I
Sbjct: 123 LFYLLVSLRIDLPWRTCGN---PWNTRYCLTPTERLEALCWTQDEDVICSTPI 172


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 92  LFXVXXLLSFXLPRLAXGCKPCPINTRCCXCPARXLQSPQWFYKTXAXCXTXI 250
           LF +   L   LP    G    P NTR C  P   L++  W       C T I
Sbjct: 176 LFYLLVSLRIDLPWRTCGN---PWNTRYCLTPTERLEALCWTQDEDIICSTPI 225


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 467 RTCVGGRAFDMVCPPGL---AFNP 529
           +TC+ GRAF ++   G    AFNP
Sbjct: 299 KTCISGRAFQVLTWLGYSNSAFNP 322


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 128 PRLAXGCKPCPINTRCC 178
           P +   CK C   T+CC
Sbjct: 431 PPIGCECKTCNSKTKCC 447


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -1

Query: 508 RAYHVESTTTYACSVLATIGGRSVR--MFEDAILVRAIRCCLGRLD--APSSYTCH 353
           R   VE +  Y C V  ++GG SV   +   A L   I      +D   P+++TC+
Sbjct: 275 REARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 505 PAGTSIQSRLQPL*LGRPCTF 567
           P G  I+   Q +  GRP TF
Sbjct: 307 PLGAEIEPSTQTIDFGRPATF 327


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 192 RAGQXQQRVLXGXGLQ 145
           ++GQ QQ VL G G+Q
Sbjct: 823 QSGQQQQSVLQGLGVQ 838


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 543 VTGPTLYLPVMLKNSWVSL 599
           +TG T  L  ML +SWVSL
Sbjct: 99  LTGGTWELGPMLCDSWVSL 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,714
Number of Sequences: 438
Number of extensions: 4777
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)