Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O24
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    49   8e-07
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.70 
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    26   6.5  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   6.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   8.6  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
 Frame = +1

Query: 250 IVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQA 429
           +++LDGG ST +   +   I    LW++  +  +P  VV  H +FL+   D+I T TYQ 
Sbjct: 1   MLMLDGG-STAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQL 58

Query: 430 SVEGFVEHL-GVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVGPYGA 606
               + E + GV  +Q Y   A ++ L      +Y  E+   + N  I L +GS   + A
Sbjct: 59  DASIYDEKVEGVPLKQVY---ANSIGL-----PVYAREHLG-LPNKYIALCLGS---HAA 106

Query: 607 HLHDGSEYDGSYADTTSIETMREWHRPRIQALVEAG------VDLLALETIP 744
            +    EY   Y   T  E +  +H+ RI+A+  +       +D +A E++P
Sbjct: 107 TIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFESLP 158


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 487 LIHNLVLSLLPDALRSLPLKLGMYW 413
           L H++++SLLPD +R+L LK   Y+
Sbjct: 214 LYHSMIISLLPDGIRNLFLKAISYF 238


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 654 RGVCITAIVFGTVVKMSSIWSDRTHYEWNV 565
           R  C T++     + +S  W DR HYE  V
Sbjct: 244 RSPCSTSVATSEPILVSKSWEDRLHYEVQV 273


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 393 GSQKIEMRIDNFVW 352
           GS+ +E+R+DN+VW
Sbjct: 28  GSKNLEVRMDNYVW 41


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 286 SCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAG 396
           SCH G  +D    +S + +   PN +  + +D L AG
Sbjct: 269 SCHSGGALDLPFTYSTKGVLKEPNMLKESGMDVLHAG 305


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = -3

Query: 312 VDDMPDVARQLGREPTVQHNYVRSFCILAARWSHRSS--FLSRFVGLKMFSNLYSAFQXX 139
           +DD   + R +  EP  + +  ++      R++  S+  +LS+   L  F +     +  
Sbjct: 330 LDDFCSLLRNMNFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLERE 389

Query: 138 XXXXXXXISQEKHRIVGAERDA 73
                    +EKHRI    RDA
Sbjct: 390 YILDKQKQKKEKHRIERKNRDA 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,640,253
Number of Sequences: 5004
Number of extensions: 74220
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)