Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O24
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    33   0.38 
Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    29   3.5  
AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical ...    29   6.1  

>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
           protein R03D7.1 protein.
          Length = 1249

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
 Frame = +1

Query: 346 THPNEVVNTHLDFLRAGADLIITNTYQ----ASVEGFVEHLGVTKEQGYELIARAVQLAK 513
           T P+ +   H  +L AGAD + TNT+     A  +   EHL         L+AR      
Sbjct: 61  TRPDIIYKIHKLYLEAGADFVETNTFSGTTIAQADYRCEHLVHEINYQSALVARRACDDV 120

Query: 514 QARTLYLEEYRDYVQNDDIPLIVGSVGPYGAHLHDGSEYDGSYADTTSIETMREWHRPRI 693
            A T      R YV         G++GP    L      +       + + + + +  + 
Sbjct: 121 GAAT----GRRRYV--------CGAIGPTNRTLSISPSVEKPDFRNVTFQELVKAYGDQA 168

Query: 694 QALVEAGVDLLALETIPXSRGSR 762
           ++L++ GVD+L +ET+  S  ++
Sbjct: 169 RSLIQGGVDVLLVETVFDSANAK 191


>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 573 WNVIILNVVTVFFQIEGAGLFSELNCAGY 487
           W VI L ++ VFF I+   LF +L+  G+
Sbjct: 22  WGVIFLGLLGVFFYIQAVTLFPDLHFEGH 50


>AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical
           protein T13G4.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 583 GSVGPYGAHLHDGSEYDGSYADTTSIETMREWHRPRIQALV--EAGVDLLALETIP 744
           GSVG      HD SEY G+Y D +  +     +   I  L    + +  L  ETIP
Sbjct: 169 GSVGTLATMYHDLSEYTGAYMDQSEAKKTAYDYFKIILTLFHNRSSIRKLIFETIP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,206,223
Number of Sequences: 27780
Number of extensions: 425689
Number of successful extensions: 1072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)