Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_O22
(1082 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.069
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.49
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.85
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 6.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 6.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.0
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.069
Identities = 26/84 (30%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Frame = -2
Query: 1081 GGXXFMGXGSSTPXXXXXEGXQXXXXGGRVXRLAGGXXXTGGPXGXXAGSXGGGGXDRXX 902
GG G GS P GG G GGP G G G GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 901 GXDECTXXXGPXG-GXXVGGGGRP 833
G GP G G GG G P
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +3
Query: 873 PXXXVHSSXPXXRSXPPPPXDPAXXPXGPPVXXXPPASLXTLP 1001
P + P S PPPP P P GPP PP + P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 873 PXXXVHSSXPXXRSXPPPPXDPAXXPXGPPVXXXPPASLXTLPP 1004
P S+ P S P PP P P PP PA + PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPP-PPSAPPMPAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 918 PPPPXDPAXXPXGPPVXXXPPASLXTLPPXXSXWXPS 1028
PPPP P PP+ PP++ PP + PS
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSA--PPPPLPASSAPS 1742
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 885 VHSSXPXXRSXPPPPXDPAXXPXGPPVXXXPPASLXTLPP 1004
+ S P S PPP PA PP P+++ +PP
Sbjct: 160 IPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +3
Query: 891 SSXPXXRSXPPPPXDPAXXPXG-PPVXXXPPASLXTLPPXXSXWXP 1025
S+ P PP P P PP PP S + PP S P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 900 PXXRSXPPPPXDPAXXPXGPPVXXXPPASL 989
P PPPP P GPP PP ++
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 918 PPPPXDPAXXPXGPPVXXXPPASLXTLPP 1004
PPPP P P+ PPA + PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -2
Query: 1003 GGRVXRLAGGXXXTGGPXGXXAGSXGGGGXDRXXGXDECTXXXGPXGGXXVGGGGRPXGX 824
GGR G GG G G G G R G GG GGR
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Query: 823 XG 818
G
Sbjct: 69 GG 70
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -2
Query: 1063 GXGSSTPXXXXXEGXQXXXXGGRVXRLAGGXXXTGGPXGXXAGSXGGGG 917
G G S G + GGR GG G G G+ GG G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3
Query: 900 PXXRSXPPPPXDPAXXPXGPPVXXXPPASLXTLP 1001
P S PP P + P PP P + + ++P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 912 SXPPPPXDPAXXPXGPPVXXXPPASLXTLP 1001
S PP P P+ P PP PP++ +LP
Sbjct: 413 STPPVPTPPSLPPSAPP--SLPPSAPPSLP 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,994
Number of Sequences: 5004
Number of extensions: 28869
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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