Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O21
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   6.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   8.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   8.2  

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 40  DLS*NFVVRLGLTFVCLLNLFTCCKQFDILM 132
           DL+ N ++   L F    NLF+  +Q+D+++
Sbjct: 108 DLNPNVIINTYLEFASASNLFSIIEQYDVVL 138


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 606 LGAYKGSNLFAPSTNKRAGNLSAASVSLSCKV*NRSGGSGLR 481
           LGAY+G+  FA    + A +++  S  L   + N S G   R
Sbjct: 115 LGAYRGNEKFASQHVQEAASMTQLSHLLPSSLINLSNGQSRR 156


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 461 RVCIRVVRRPDPPDLFHTLQLNETEAADRFPARLFVEGAKRLEP 592
           R C   +R+PD  +  + LQL++    +++P ++F+    R  P
Sbjct: 707 RFCYVQMRKPD--EAHNALQLHKKLLEEKYPIQVFISDPLRRTP 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,466
Number of Sequences: 5004
Number of extensions: 70706
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)