Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O21
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331...    31   1.2  
11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966           29   3.8  
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    29   5.0  
05_01_0493 + 4113869-4116728,4116859-4117370                           29   5.0  
03_05_0476 + 24699911-24699962,24700074-24700290,24701516-247016...    28   8.7  

>01_03_0045 +
           11929624-11929890,11930500-11930551,11932683-11933103,
           11933574-11934162
          Length = 442

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 361 TRVLHLARRSTSDHCQSSRIDHQ*LPPPHCTTVPK 257
           +RV H   R+T   C + R+D Q LPPP  T  P+
Sbjct: 382 SRVAHRKVRATCPKCPTRRLDRQSLPPP-STRAPR 415


>11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966
          Length = 480

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 559 FVRRRRKEIR-AFVRT*RRRPA-GATLFPEQKRRAALYVEAEPEXGPRNEW 705
           F+R+R +E    F  T R+ P  GAT   EQK RAA    A P   P   W
Sbjct: 284 FMRKRYREADDLFKDTSRQDPVDGATGEAEQKARAAAAAAAPPPTAPSAMW 334


>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 363 PPFAVRAACPGCT-LGVPCVCCSALHYQPTNGTSECA 470
           PP+    A P C  LGV CVC  AL    ++ ++  A
Sbjct: 72  PPWLCLVASPCCAVLGVACVCLGALRSSSSSASAAAA 108


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 27/88 (30%), Positives = 35/88 (39%)
 Frame = +1

Query: 304 CDWIGSGLTSNAERGVTPVYLRLP*GQRVLDVPSGCLASVVPPSTTSRRTGLQSVHTGRT 483
           C W  +G+T NA+ GVT + L          VP    A+V    T    TG         
Sbjct: 62  CRW--TGVTCNADGGVTELSLEFV--DLFGGVPGNLAAAVGRTLTRLVLTGANLTGPIPP 117

Query: 484 ETGPARPISHLAA**NRSCGQIPSAFVR 567
           E G    ++HL    N   G IP+A  R
Sbjct: 118 ELGELPALAHLDLSNNALTGTIPAALCR 145


>03_05_0476 +
           24699911-24699962,24700074-24700290,24701516-24701682,
           24701786-24701898,24701986-24702206,24702396-24702834
          Length = 402

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 301 QCDWIGSGLTSNAERGVTPVYLRL 372
           +C+W G GLT   + G  P YL L
Sbjct: 259 ECEWTGVGLTFVVDSGSNPNYLAL 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,197,105
Number of Sequences: 37544
Number of extensions: 572356
Number of successful extensions: 1587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)