Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O21
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related ge...    31   1.1  
U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related ge...    31   1.1  
Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U50143-1|AAB02199.1|  349|Caenorhabditis elegans ARG-1 protein.        29   4.4  
Z77666-3|CAB01225.1|  698|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z69636-2|CAA93463.3|  247|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related genes
           protein 1, isoformb protein.
          Length = 349

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 414 CVCCSALHYQ-PTNGTSECAYGSYGD 488
           C+   ALH++  TNG  +CA G YGD
Sbjct: 144 CIPSPALHWECSTNGVRQCAVGWYGD 169


>U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related genes
           protein 1, isoforma protein.
          Length = 357

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 414 CVCCSALHYQ-PTNGTSECAYGSYGD 488
           C+   ALH++  TNG  +CA G YGD
Sbjct: 144 CIPSPALHWECSTNGVRQCAVGWYGD 169


>Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical
           protein F32A7.4 protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
 Frame = +3

Query: 354 TRVPPFAVRAACP---GCTLGVPCVCCSALHYQPTNGTSECAYGSYGDRTRPTYFTPCSL 524
           T +P   V A CP   GC LGV   C     +QP       +     D T  + FT   L
Sbjct: 393 TMLPTATVLAPCPHDLGCPLGVHSSCTFNTRFQPIRADGRRS-EKESDGTEVSKFTYMIL 451

Query: 525 MKQKLRTDSQRVCS*KAQRD*SLCTHLT----TATRGSYAVSGAEKAG 656
            K + + +++   + +  ++  L  H+T    TA RG   ++ ++K G
Sbjct: 452 EKSQRKVNNEH--TERILKNRKLGGHVTCDVCTAFRGIQRITLSKKHG 497


>U50143-1|AAB02199.1|  349|Caenorhabditis elegans ARG-1 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 414 CVCCSALHYQ-PTNGTSECAYGSYGD 488
           C+   ALH++  TNG  +CA G YG+
Sbjct: 144 CIPSPALHWECSTNGVRQCAVGWYGN 169


>Z77666-3|CAB01225.1|  698|Caenorhabditis elegans Hypothetical
           protein K08E7.3 protein.
          Length = 698

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 296 PMTPAPALHDSPKTKTTKKNSRANLILNNYSXDIKKQGESDH 171
           P +PA  +H  PK +  ++ SR+N  ++    D    G  +H
Sbjct: 137 PASPAATMHRPPKARLPRRLSRSNGNIDKAGIDNSSGGVENH 178


>Z69636-2|CAA93463.3|  247|Caenorhabditis elegans Hypothetical
           protein F20B10.3 protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 423 CSALHYQPTNGTSECAYGSYGDRTRPTYFTPCS 521
           CS  + QPT   S CA G+ G   +P   +PCS
Sbjct: 54  CSTGNCQPTPTLSPCASGNCGS-VQPVQASPCS 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,634,377
Number of Sequences: 27780
Number of extensions: 446008
Number of successful extensions: 1242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)