Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O21
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    27   0.30 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 663 QSGPPFLLRKQRSSRGSPSLGAYKGSNLFA 574
           QS P F+ R++ S+  SPSL   K   L A
Sbjct: 359 QSSPKFVARREESNSSSPSLDLGKEGGLEA 388


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 NDSRPRTARQSQNQNNEEKQPRKSH 220
           ND++    RQ+ NQNN+    R  +
Sbjct: 511 NDNKRNGNRQNDNQNNQNDNNRNDN 535


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 330 RQTTANPVALITNDSRPRTARQSQNQNNE 244
           RQT  N V  I ND+R +T   ++    E
Sbjct: 195 RQTFENQVNRILNDARDKTGGSAKKSLTE 223


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 639 RKQRSSRGSPSLGAYKGSNLFAPSTNKRAGNLSAASVSL 523
           +KQ SS G+ S+  Y G  L + S   ++   +A   S+
Sbjct: 782 KKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSV 820


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 639 RKQRSSRGSPSLGAYKGSNLFAPSTNKRAGNLSAASVSL 523
           +KQ SS G+ S+  Y G  L + S   ++   +A   S+
Sbjct: 872 KKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSV 910


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 324 TTANPVALITNDSRPRTARQ--SQNQNNEEKQPRKSHLK 214
           T   P  + T   RP+T +   S+  +NE ++ R++HL+
Sbjct: 27  TMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLR 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,920
Number of Sequences: 438
Number of extensions: 5421
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)